Escherichia coli 1-392-07_S4_C3

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli 1-392-07_S4_C3 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or singles and is classified as a facultative anaerobe, meaning it can thrive in both aerobic and anaerobic environments. This bacterium is motile, possessing flagella that enable movement, which is crucial for its interaction with the host and its environment. The optimal growth temperature for E. coli 1-392-07_S4_C3 is 37 degrees Celsius, indicating that it is mesophilic and well-adapted to the conditions of the human body and other warm-blooded hosts. This strain has a single replicon and is characterized by having two membranes, a trait common among Gram-negative bacteria. E. coli 1-392-07_S4_C3 is free-living but associated with a host habitat, suggesting that while it can exist independently, it may also engage in symbiotic or pathogenic relationships with host organisms. This adaptability underscores the ecological versatility of E. coli strains, which can be beneficial in digestive processes or detrimental as pathogens under certain conditions. In summary, the traits of Escherichia coli 1-392-07_S4_C3 highlight its significant role in various ecosystems, particularly in the gut microbiota of hosts, where it can contribute to nutrient cycling and overall health, while also posing risks as an opportunistic pathogen depending on the environmental context.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strain1-392-07_S4_C3

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli 1-392-07_S4_C3
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Escherichia coli 1-392-07_S4_C3


Gene Summary

Adenine Count

1436135 bp

Thymine Count

1430766 bp

Guanine Count

1465213 bp

Cytosine Count

1474113 bp

Genome Length

5806227 bp

Protein-coding Genes

5782 genes

Non-Coding Genes

470 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Tail componentAD40_5323Not AvailableNegative111076 - 1113178878.17
Tail componentAD40_5324Not AvailableNegative111314 - 11189221590.0
Head-tail joining proteinAD40_5325Not AvailableNegative111904 - 11225712704.8
Dna packaging proteinAD40_5326Not AvailableNegative112269 - 11266413975.4
Capsid componentAD40_5327Not AvailableNegative112706 - 11373138077.2
Trna-gln;Not AvailableNot AvailablePositive113023 - 113097Not Available
Trna-leu;Not AvailableNot AvailablePositive113103 - 113189Not Available
Trna-gln;Not AvailableNot AvailablePositive113135 - 113209Not Available
Trna-cys;Not AvailableNot AvailablePositive113202 - 113275Not Available
Trna-gln;Not AvailableNot AvailablePositive113247 - 113321Not Available

Displaying genes 1 – 10 of 6252 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

No health effects information available for this bacterium.