Helicobacter pylori strain Col2025 C8643

Gram-negativeSpirillaNon-motileMicroaerophilic

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Helicobacteraceae

Genus

Helicobacter

Description

Helicobacter pylori strain Col2025 C8643 is a Gram-negative bacterium characterized by its microaerophilic oxygen requirement and spiral shape (spirilla). This strain is notable for its presence in various hosts, including Homo sapiens, Gallus gallus, Aves, Primates, Mammalia, Amoeba, Rodentia, and Cricetinae, indicating a broad ecological niche. The bacterium exhibits a single cell arrangement and possesses flagella, which suggests some level of mobility, although it is described as non-motile in the context provided. Col2025 C8643 thrives at an optimal temperature of 37°C and falls within the mesophilic temperature range. Its biotic relationship is categorized as free-living, and it possesses a single replicon and two membranes, typical features of its genus. Clinically, H. pylori strain Col2025 C8643 is predominantly associated with numerous gastrointestinal diseases, including chronic gastric inflammation, peptic ulcers, and various forms of gastric cancer such as adenocarcinoma and gastric non-cardia carcinomas. The bacterium is known to cause significant health effects, including gastritis, GERD, and atrophic gastritis, highlighting its role as a human pathogen. The ecological insight from the data suggests that H. pylori's association with a diverse range of hosts may facilitate its persistence and adaptation in various environments, contributing to its role in gastrointestinal diseases across different species. This adaptability reflects the complexity of host-microbe interactions and the potential for cross-species transmission, which may influence disease dynamics in human populations.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyHelicobacteraceae
GenusHelicobacter
SpeciesHelicobacter pylori
Strainstrain Col2025 C8643

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Helicobacter pylori strain Col2025 C8643
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophilic
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Aves
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Helicobacter pylori strain Col2025 C8643, whole genome shotgun

Gene Summary

Adenine Count

502439 bp

Thymine Count

496951 bp

Guanine Count

314644 bp

Cytosine Count

323731 bp

Genome Length

1638204 bp

Protein-coding Genes

1451 genes

Non-Coding Genes

41 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sulfate permeaseGZ76_07085Not AvailablePositive1353441 - 135459841436.8
Trna-asnNot AvailableNot AvailablePositive1354633 - 1354707Not Available
membrane proteinGZ76_07095Not AvailableNegative1354837 - 135628853059.1
membrane proteinGZ76_07125Not AvailableNegative1360740 - 136165734297.0
pp_01215GZ76_07130Not AvailableNegative1361627 - 1362613Not Available
trna(ile)-lysidine synthetaseGZ76_07135Not AvailableNegative1362703 - 136371940002.0
atp-binding proteinGZ76_07140Not AvailableNegative1363755 - 136482241738.2
hypothetical proteinGZ76_07145Not AvailableNegative1364831 - 136513611648.1
dynactin subunit 1GZ76_07150Not AvailableNegative1365228 - 136607031849.3
labile enterotoxin outputaGZ76_07155Not AvailableNegative1366124 - 136692731006.8

Displaying genes 1251 – 1260 of 1492 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Chronic gastric inflammationCausesPMC10226649
Gastric cancerCausesPMC10226649
Gastric ulcersCausesPMC10420633
Stomach carcinomaCausesPMC10420633
UlcersCausesPMC10420633
AdenocarcinomaCausesPMC10420633
Mucosa-associated lymphoid tissue lymphomaCausesPMC10420633
GerdCausesPMC10712878
GastritisCausesPMC10712878
Gastric cancerCausesPMC10732068

Displaying health effects 1 – 10 of 94 in total