Pseudorhizobium pelagicum strain R1-200B4

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Pseudorhizobium

Description

Pseudorhizobium pelagicum strain R1-200B4 is characterized by having a single replicon, which suggests a streamlined genomic structure. This trait may confer certain advantages in terms of replication efficiency and adaptability to its environmental conditions. The strain is associated with the accession number JOKI00000000.1, which allows for its identification and retrieval in genomic databases. As a member of the Pseudorhizobium genus, this strain is part of a group of bacteria known for their symbiotic relationships with plants, particularly legumes. While specific symbiotic capabilities of strain R1-200B4 are not detailed, the genus is generally recognized for its role in nitrogen fixation, an essential process that contributes to soil fertility and plant growth. The ecological implications of Pseudorhizobium pelagicum strain R1-200B4 could be significant, particularly in marine or coastal environments where it might be found. Its potential to form associations with plants could influence nutrient cycling and ecosystem dynamics in these habitats. Understanding the traits of this strain can provide insights into its role in the marine microbiome and its interactions with various plant species. Overall, the single replicon feature and the strain's taxonomic classification underline its potential importance in ecological and agricultural contexts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusPseudorhizobium
SpeciesPseudorhizobium pelagicum
Strainstrain R1-200B4

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudorhizobium pelagicum strain R1-200B4 contig_63, whole genome

Gene Summary

Adenine Count

954254 bp

Thymine Count

954503 bp

Guanine Count

1610731 bp

Cytosine Count

1614315 bp

Genome Length

5134606 bp

Protein-coding Genes

4388 genes

Non-Coding Genes

85 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phosphate abc transporter permeaseGV67_11700Not AvailableNegative3930423 - 393175447636.4
abc transporter permeaseGV67_11705Not AvailableNegative3931751 - 393321151625.9
phosphonate abc transporter substrate-binding proteinGV67_11710Not AvailableNegative3933281 - 393432136754.2
hypothetical proteinGV67_11715Not AvailableNegative3934467 - 393480211644.0
hypothetical proteinGV67_11720Not AvailableNegative3934937 - 393538616843.0
hypothetical proteinGV67_11725Not AvailableNegative3935786 - 393641221418.8
hypothetical proteinGV67_11730Not AvailablePositive3936821 - 393713711781.5
lysine decarboxylaseGV67_11735Not AvailableNegative3937209 - 393806932103.4
2,3,4,5-tetrahydropyridine-2,6-carboxylate n-succinyltransferaseGV67_11740Not AvailablePositive3938208 - 393906230241.1
succinyl-diaminopimelate desuccinylaseGV67_11745Not AvailablePositive3939072 - 394026842464.2

Displaying genes 3501 – 3510 of 4473 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.