Pseudorhizobium pelagicum strain R1-200B4

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Pseudorhizobium

Description

Pseudorhizobium pelagicum strain R1-200B4 is characterized by having a single replicon, which suggests a streamlined genomic structure. This trait may confer certain advantages in terms of replication efficiency and adaptability to its environmental conditions. The strain is associated with the accession number JOKI00000000.1, which allows for its identification and retrieval in genomic databases. As a member of the Pseudorhizobium genus, this strain is part of a group of bacteria known for their symbiotic relationships with plants, particularly legumes. While specific symbiotic capabilities of strain R1-200B4 are not detailed, the genus is generally recognized for its role in nitrogen fixation, an essential process that contributes to soil fertility and plant growth. The ecological implications of Pseudorhizobium pelagicum strain R1-200B4 could be significant, particularly in marine or coastal environments where it might be found. Its potential to form associations with plants could influence nutrient cycling and ecosystem dynamics in these habitats. Understanding the traits of this strain can provide insights into its role in the marine microbiome and its interactions with various plant species. Overall, the single replicon feature and the strain's taxonomic classification underline its potential importance in ecological and agricultural contexts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusPseudorhizobium
SpeciesPseudorhizobium pelagicum
Strainstrain R1-200B4

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudorhizobium pelagicum strain R1-200B4 contig_63, whole genome

Gene Summary

Adenine Count

954254 bp

Thymine Count

954503 bp

Guanine Count

1610731 bp

Cytosine Count

1614315 bp

Genome Length

5134606 bp

Protein-coding Genes

4388 genes

Non-Coding Genes

85 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cell division protein ftsaGV67_06315Not AvailableNegative3127563 - 312889146771.4
cell division protein ftsqGV67_06320Not AvailableNegative3128888 - 312981433898.9
d-alanine--d-alanine ligaseGV67_06325Not AvailableNegative3129802 - 313072833596.7
udp-n-acetylenolpyruvoylglucosamine reductaseGV67_06330Not AvailableNegative3130977 - 313195135079.2
udp-n-acetylmuramate--alanine ligaseGV67_06335Not AvailableNegative3131954 - 313336350500.5
udp-diphospho-muramoylpentapeptide beta-n-acetylglucosaminyltransferaseGV67_06340Not AvailableNegative3133360 - 313448438746.7
cell division protein ftswGV67_06345Not AvailableNegative3134489 - 313564342184.6
udp-n-acetylmuramoyl-l-alanyl-d-glutamate synthetaseGV67_06350Not AvailableNegative3135646 - 313705248718.9
phospho-n-acetylmuramoyl-pentapeptide- transferaseGV67_06355Not AvailableNegative3137057 - 313816039249.1
udp-n-acetylmuramoylalanyl-d-glutamyl-2, 6-diaminopimelate--d-alanyl-d-alanine ligaseGV67_06360Not AvailableNegative3138185 - 313961850578.8

Displaying genes 2841 – 2850 of 4473 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.