Devosia sp. LC5

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Devosiaceae

Genus

Devosia

Description

Devosia sp. LC5 is a Gram-negative, rod-shaped bacterium characterized by its single replicon. This taxonomic classification places it within the genus Devosia, which is known for its diverse ecological roles and associations. The Gram-negative nature of Devosia sp. LC5 suggests it possesses an outer membrane containing lipopolysaccharides, which can influence its interactions with the environment, including potential pathogenicity and resistance to certain antibiotics. The complete genome sequence of Devosia sp. LC5 is accessible under the accession number JNNO00000000.1. This genomic information can provide insights into the metabolic pathways and ecological functionalities of this organism, although specific metabolic capabilities are not detailed in the provided evidence. Ecologically, members of the genus Devosia are often found in various environments, including soil and aquatic habitats, where they can play roles in nutrient cycling and organic matter degradation. The presence of a single replicon may indicate a streamlined genome, potentially reflecting adaptation to specific ecological niches or habitats. Overall, the traits of Devosia sp. LC5 suggest that it may be well-suited for survival in diverse environments, contributing to ecological processes such as decomposition and nutrient cycling, although further research would be necessary to clarify its specific roles and interactions in its native habitat.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyDevosiaceae
GenusDevosia
SpeciesDevosia sp. LC5
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatLimestone Capitan Formation at 347 m in Lechuguilla Cave, New Mexico, U.S.A.
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Devosia sp. LC5 contig9, whole genome shotgun sequence.

Gene Summary

Adenine Count

790491 bp

Thymine Count

795978 bp

Guanine Count

1325911 bp

Cytosine Count

1290478 bp

Genome Length

4202858 bp

Protein-coding Genes

4089 genes

Non-Coding Genes

83 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinFF80_00069Not AvailablePositive67814 - 6814312595.8
5'-methylthioadenosine nucleosidase / s-adenosylhomocysteine nucleosidaseFF80_00070Not AvailableNegative68140 - 6873920846.2
hypothetical proteinFF80_00071Not AvailablePositive68814 - 6914012647.3
inositol monophosphataseFF80_00072Not AvailableNegative69157 - 6996929708.4
cytoplasmic glycerophosphodiester phosphodiesteraseFF80_00073Not AvailableNegative69998 - 7083430030.7
putative spermidine/putrescine transporterFF80_00074Not AvailableNegative70836 - 7187337562.4
binding-protein-dependent transport systems inner membrane componentFF80_00075Not AvailableNegative71882 - 7270629870.4
putative abc spermidine/putrescine transporter, inner membrane subunitFF80_00076Not AvailableNegative72708 - 7359232406.5
2-aminoethylphosphonate abc transporter substrate-binding proteinFF80_00077Not AvailableNegative73589 - 7473740541.4
pilz domain proteinFF80_00078Not AvailablePositive75294 - 7558410709.8

Displaying genes 121 – 130 of 4172 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.