Bacteroides fragilis str. 3725 D9 ii

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Bacteroides

Description

Bacteroides fragilis str. 3725 D9 ii is a Gram-negative, rod-shaped bacterium that is classified as a chemoorganotroph, indicating that it derives its energy from organic compounds. This organism is an anaerobe, thriving in environments devoid of oxygen, and is typically associated with host organisms, reflecting its role in the microbiome. The bacterium exhibits a single-cell arrangement and possesses two membranes, characteristic of its Gram-negative classification. Bacteroides fragilis str. 3725 D9 ii does not exhibit mobility, as it lacks flagella, which influences its ecological interactions within its habitat. The optimal growth temperature for this strain is 37°C, aligning with the mesophilic temperature range conducive to the growth of many mammalian-associated microorganisms. It has a single replicon in its genome, which can impact its genetic stability and adaptability. In terms of its ecological role, Bacteroides fragilis is recognized for its free-living lifestyle within the host-associated environments, contributing to the complex microbial community dynamics. Its presence in the gut microbiota is significant for maintaining host health, as it plays a role in digestion and immune modulation. Understanding the traits of Bacteroides fragilis str. 3725 D9 ii emphasizes the importance of anaerobic bacteria in the microbiome and their contributions to host biology.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides fragilis
Strain3725 D9 ii

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Bacteroides fragilis str. 3725 D9 ii
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Bacteroides fragilis str. 3725 D9 ii gbf3725D9ii.contig.92, whole

Gene Summary

Adenine Count

2105367 bp

Thymine Count

2107673 bp

Guanine Count

1527462 bp

Cytosine Count

1539539 bp

Genome Length

7280041 bp

Protein-coding Genes

6255 genes

Non-Coding Genes

141 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Portal proteinM082_1307Not AvailableNegative1641440 - 164271447155.3
Terminase large subunitM082_1308Not AvailableNegative1642714 - 164442965487.2
AttrNot AvailableNot AvailablePositive1658325 - 1658368Not Available
AttlNot AvailableNot AvailablePositive3203769 - 3203780Not Available
1_nc_021800: phage integrase family site-specific recombinaseM082_2623Not AvailablePositive3203854 - 320506547872.8
putative two-component sensor histidine kinaseM082_2624Not AvailableNegative3205114 - 320562019569.6
Putative n-acetylmuramoyl-l-alanine amidaseM082_2625Not AvailableNegative3205617 - 320611118059.4
hypothetical proteinM082_2626Not AvailableNegative3206108 - 320649415280.0
Hypothetical proteinM082_2627Not AvailableNegative3206507 - 320865177974.3
Putative tail proteinM082_2628Not AvailableNegative3208663 - 3214851229510.0

Displaying genes 21 – 30 of 6396 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.