Sphingopyxis sp. LC81

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingopyxidaceae

Genus

Sphingopyxis

Description

Sphingopyxis sp. LC81 is a rod-shaped bacterium characterized by a singular replicon, indicating a streamlined genomic structure. The organism was identified and its genomic data is accessible under the accession number JNFD00000000.1, providing a basis for further taxonomic and functional studies. The rod shape of Sphingopyxis sp. LC81 suggests a morphology that is typical for many bacteria, potentially influencing its motility and ecological interactions. The presence of a single replicon may imply a simpler regulatory mechanism for gene expression and replication compared to organisms with multiple replicons, which could affect its adaptability to various environments. Understanding the characteristics of Sphingopyxis sp. LC81 can also offer insights into its ecological role. Rod-shaped bacteria often participate in nutrient cycling and can be involved in the degradation of organic materials in their environments, contributing to ecosystem functions. The specific traits of Sphingopyxis sp. LC81, including its morphological shape and genomic structure, suggest it may play a pivotal role in microbial communities, potentially influencing biogeochemical processes in its habitat. Further research could elucidate its specific ecological contributions and interactions within its ecosystem.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingopyxidaceae
GenusSphingopyxis
SpeciesSphingopyxis sp. LC81
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingopyxis sp. LC81 contig9, whole genome shotgun sequence.

Gene Summary

Adenine Count

765214 bp

Thymine Count

776805 bp

Guanine Count

1439103 bp

Cytosine Count

1416168 bp

Genome Length

4397290 bp

Protein-coding Genes

4098 genes

Non-Coding Genes

62 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
membrane protein involved in the export of o-antigen and teichoic acid-like proteinFG91_01820Not AvailableNegative1932030 - 193356253482.0
glycerol-3-phosphate dehydrogenaseFG91_01821Not AvailableNegative1933639 - 193463133532.5
trna n6-adenosine threonylcarbamoyltransferaseFG91_01822Not AvailableNegative1934628 - 193566235130.3
porphobilinogen deaminaseFG91_01823Not AvailablePositive1935726 - 193667333009.6
uroporphyrinogen-iii synthaseFG91_01824Not AvailablePositive1936670 - 193735923880.4
hypothetical proteinFG91_01825Not AvailablePositive1937379 - 193827531285.3
acyl-coa dehydrogenase-like proteinFG91_01826Not AvailablePositive1938326 - 193952843136.8
l-carnitine dehydratase/bile acid-inducible protein fFG91_01827Not AvailablePositive1939548 - 194065738585.2
tonb-dependent receptor precursorFG91_01828Not AvailableNegative1940706 - 194306084138.6
transcriptional regulator, tetr familyFG91_01829Not AvailablePositive1943264 - 194391424566.8

Displaying genes 1821 – 1830 of 4160 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.