Sphingopyxis sp. LC81

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingopyxidaceae

Genus

Sphingopyxis

Description

Sphingopyxis sp. LC81 is a rod-shaped bacterium characterized by a singular replicon, indicating a streamlined genomic structure. The organism was identified and its genomic data is accessible under the accession number JNFD00000000.1, providing a basis for further taxonomic and functional studies. The rod shape of Sphingopyxis sp. LC81 suggests a morphology that is typical for many bacteria, potentially influencing its motility and ecological interactions. The presence of a single replicon may imply a simpler regulatory mechanism for gene expression and replication compared to organisms with multiple replicons, which could affect its adaptability to various environments. Understanding the characteristics of Sphingopyxis sp. LC81 can also offer insights into its ecological role. Rod-shaped bacteria often participate in nutrient cycling and can be involved in the degradation of organic materials in their environments, contributing to ecosystem functions. The specific traits of Sphingopyxis sp. LC81, including its morphological shape and genomic structure, suggest it may play a pivotal role in microbial communities, potentially influencing biogeochemical processes in its habitat. Further research could elucidate its specific ecological contributions and interactions within its ecosystem.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingopyxidaceae
GenusSphingopyxis
SpeciesSphingopyxis sp. LC81
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingopyxis sp. LC81 contig9, whole genome shotgun sequence.

Gene Summary

Adenine Count

765214 bp

Thymine Count

776805 bp

Guanine Count

1439103 bp

Cytosine Count

1416168 bp

Genome Length

4397290 bp

Protein-coding Genes

4098 genes

Non-Coding Genes

62 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
amino acid transporterFG91_01730Not AvailablePositive1835497 - 183703553734.6
dtdp-3-amino-3,4, 6-trideoxy-alpha-d-glucopyranoseFG91_01731Not AvailablePositive1837199 - 183780722280.6
chromosomal replication initiator protein dnaaFG91_01732Not AvailableNegative1837940 - 183930450048.5
30s ribosomal protein s20FG91_01733Not AvailableNegative1839807 - 18400709406.59
formamidopyrimidine-dna glycosylaseFG91_01734Not AvailableNegative1840258 - 184106729116.2
ubiquinone/menaquinone biosynthesis c-methyltransferase ubieFG91_01735Not AvailablePositive1841161 - 184189827455.9
2-octaprenylphenol hydroxylaseFG91_01736Not AvailablePositive1841895 - 184343956921.9
phosphopantothenate-cysteine ligase / phosphopantothenoylcysteine decarboxylaseFG91_01737Not AvailablePositive1843584 - 184493647483.4
deoxyuridine 5'-triphosphate nucleotidohydrolaseFG91_01738Not AvailablePositive1844899 - 184543518224.6
uba/thif-type nad/fad binding fold proteinFG91_01739Not AvailablePositive1845439 - 184618825828.2

Displaying genes 1731 – 1740 of 4160 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.