Escherichia coli 2-005-03_S4_C3

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli 2-005-03_S4_C3 is a Gram-negative, rod-shaped bacterium that is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments. This strain is motile, possessing flagella that enable movement, and it typically exists in pairs or as single cells. The optimal growth temperature for E. coli 2-005-03_S4_C3 is 37°C, placing it within the mesophilic temperature range, which is common for many pathogenic and non-pathogenic E. coli strains. The bacterium is host-associated, suggesting a relationship with a specific host organism, and it is classified as free-living, which indicates that it can survive independently of host organisms under certain conditions. E. coli 2-005-03_S4_C3 has a single replicon and is characterized by having two membranes, consistent with the structure of Gram-negative bacteria. Understanding the ecological role of E. coli 2-005-03_S4_C3 is significant, as it exemplifies the diverse relationships that bacteria can maintain within their environments. Its ability to adapt to varying oxygen levels and temperatures enhances its survival in different ecological niches. These traits underscore the importance of E. coli in microbiological studies, particularly in understanding microbial dynamics and interactions in host-associated and free-living conditions. The strain is cataloged under accession number JJLJ00000000.1, which can be referenced for further genetic and phenotypic studies.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strain2-005-03_S4_C3

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli 2-005-03_S4_C3
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Escherichia coli 2-005-03_S4_C3


Gene Summary

Adenine Count

1292556 bp

Thymine Count

1293240 bp

Guanine Count

1331594 bp

Cytosine Count

1329205 bp

Genome Length

5246595 bp

Protein-coding Genes

5305 genes

Non-Coding Genes

388 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Replication endonucleaseAD23_0908Not AvailablePositive877037 - 87945192330.4
Hypothetical proteinAD23_0909Not AvailablePositive879604 - 8797927286.72
Dna damage inducible proteinAD23_0910Not AvailablePositive879803 - 8800369160.16
hypothetical proteinAD23_0911Not AvailablePositive880412 - 88132634685.3
hiran domain proteinAD23_0912Not AvailablePositive881323 - 88206328131.5
Portal proteinAD23_0913Not AvailableNegative882098 - 88313539184.1
Terminase atpase subunit family proteinAD23_0914Not AvailableNegative883135 - 88490167036.4
Gpo family capsid scaffolding proteinAD23_0915Not AvailablePositive885044 - 88587730592.8
Major capsid protein, p2 familyAD23_0916Not AvailablePositive885894 - 88695239151.4
Terminase endonuclease subunitAD23_0917Not AvailablePositive886956 - 88760623805.7

Displaying genes 11 – 20 of 5693 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

No health effects information available for this bacterium.