Burkholderia sp. lig30

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Burkholderiaceae

Genus

Burkholderia

Description

Burkholderia sp. lig30 is characterized by having a single replicon, indicating a streamlined genomic structure. The organism is cataloged under the accession number JGVW00000000.1, which serves as a reference for its genetic data. Burkholderia species are known for their diverse metabolic capabilities and ecological roles, often found in various environments, including soil and water. This genus is also notable for its interactions with plants and its potential applications in bioremediation and agriculture. However, specific traits and ecological roles of Burkholderia sp. lig30 are not detailed in the available data. The presence of a single replicon in Burkholderia sp. lig30 may suggest a specialization that could be advantageous in certain ecological niches. This trait might allow for efficient replication and maintenance of essential genes, potentially enhancing its adaptability to specific environmental conditions. Understanding the genomic structure and traits of Burkholderia sp. lig30 can provide insights into its ecological interactions and potential applications in biotechnology. Further studies could elucidate its specific roles in the ecosystem and its interactions with other microorganisms or plants.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusBurkholderia
SpeciesBurkholderia sp. lig30
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Burkholderia sp. lig30 ctg9, whole genome shotgun sequence.

Gene Summary

Adenine Count

927376 bp

Thymine Count

919950 bp

Guanine Count

1835782 bp

Cytosine Count

1830437 bp

Genome Length

5513545 bp

Protein-coding Genes

4950 genes

Non-Coding Genes

111 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
prolyl-trna synthetaseLIG30_0686Not AvailablePositive341212 - 34294863581.6
multiple antibiotic resistance (marc)-related proteinLIG30_0687Not AvailablePositive342973 - 34357521776.8
phosphoribosyltransferaseLIG30_0688Not AvailableNegative343653 - 34420420403.7
signal recognition 54 kda proteinLIG30_0689Not AvailableNegative344298 - 34566549369.9
cytochrome c assembly proteinLIG30_0690Not AvailablePositive345753 - 34665532481.0
hypothetical proteinLIG30_0691Not AvailablePositive346669 - 34697410473.5
n-acetylmuramyl-l-alanine amidase, negative regulator of ampc, ampdLIG30_0692Not AvailablePositive346974 - 34756421546.1
ribonucleoside-diphosphate reductase, alpha subunitLIG30_0693Not AvailablePositive348011 - 350983108897.0
ribonucleoside-diphosphate reductaseLIG30_0694Not AvailablePositive351347 - 35255845827.7
histone h1 family protein nucleoprotein hc2LIG30_0695Not AvailablePositive352996 - 35379925928.1

Displaying genes 371 – 380 of 5061 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Export CSV
Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.