Bacteroides fragilis str. 1007-1-F #3

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Bacteroides

Description

Bacteroides fragilis str. 1007-1-F #3 is a Gram-negative, anaerobic, rod-shaped bacterium that primarily inhabits host-associated environments, indicating its role in symbiotic relationships within the gut microbiota. This organism is classified as a chemoorganotroph, utilizing organic compounds as its energy source. It has a single replicon and possesses a double membrane structure, characteristic of many Gram-negative bacteria. In terms of mobility, Bacteroides fragilis str. 1007-1-F #3 does not exhibit motility, despite having flagella. Its optimal growth temperature is 37°C, placing it within the mesophilic temperature range, which is typical for many pathogenic and commensal bacteria that thrive at human body temperature. The biotic relationship of Bacteroides fragilis str. 1007-1-F #3 is noted as free-living, suggesting that while it may be found as part of a larger microbial community, it can also exist independently. This adaptability may contribute to its ecological success in various host-associated environments. Overall, the traits of Bacteroides fragilis str. 1007-1-F #3 highlight its potential significance in the gut ecosystem, where it may play a role in digestion and nutrient absorption, influencing the overall health of the host. Understanding such organisms better can provide insights into their contributions to health and disease in human microbiomes.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides fragilis
Strain1007-1-F #3

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Bacteroides fragilis str. 1007-1-F #3
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Bacteroides fragilis str. 1007-1-F #3 gbf10071F3.contig.105, whole

Gene Summary

Adenine Count

1612224 bp

Thymine Count

1622070 bp

Guanine Count

1233669 bp

Cytosine Count

1227038 bp

Genome Length

5695001 bp

Protein-coding Genes

5139 genes

Non-Coding Genes

185 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
papain cysteine protease family proteinM146_3660Not AvailablePositive4265250 - 426643444147.6
response regulatorM146_3661Not AvailableNegative4266616 - 426735328276.4
histidine kinase family proteinM146_3662Not AvailableNegative4267350 - 426851945541.3
meta-pathway of phenol degradation family proteinM146_3663Not AvailablePositive4268709 - 426938925780.2
hypothetical proteinM146_3664Not AvailableNegative4269896 - 42700154587.53
putative membrane proteinM146_3665Not AvailableNegative4270156 - 42702754721.98
tonb-linked outer membrane, susc/raga family proteinM146_3666Not AvailablePositive4270283 - 4273438117000.0
starch-binding associating with outer membrane family proteinM146_3667Not AvailablePositive4273453 - 427514464573.8
f5/8 type c domain proteinM146_3668Not AvailablePositive4275221 - 427710170863.4
electron transfer flavodomain proteinM146_3669Not AvailablePositive4277567 - 427837328772.3

Displaying genes 4031 – 4040 of 5324 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.