Bacteroides fragilis str. 1007-1-F #3

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Bacteroides

Description

Bacteroides fragilis str. 1007-1-F #3 is a Gram-negative, anaerobic, rod-shaped bacterium that primarily inhabits host-associated environments, indicating its role in symbiotic relationships within the gut microbiota. This organism is classified as a chemoorganotroph, utilizing organic compounds as its energy source. It has a single replicon and possesses a double membrane structure, characteristic of many Gram-negative bacteria. In terms of mobility, Bacteroides fragilis str. 1007-1-F #3 does not exhibit motility, despite having flagella. Its optimal growth temperature is 37°C, placing it within the mesophilic temperature range, which is typical for many pathogenic and commensal bacteria that thrive at human body temperature. The biotic relationship of Bacteroides fragilis str. 1007-1-F #3 is noted as free-living, suggesting that while it may be found as part of a larger microbial community, it can also exist independently. This adaptability may contribute to its ecological success in various host-associated environments. Overall, the traits of Bacteroides fragilis str. 1007-1-F #3 highlight its potential significance in the gut ecosystem, where it may play a role in digestion and nutrient absorption, influencing the overall health of the host. Understanding such organisms better can provide insights into their contributions to health and disease in human microbiomes.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides fragilis
Strain1007-1-F #3

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Bacteroides fragilis str. 1007-1-F #3
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Bacteroides fragilis str. 1007-1-F #3 gbf10071F3.contig.105, whole

Gene Summary

Adenine Count

1612224 bp

Thymine Count

1622070 bp

Guanine Count

1233669 bp

Cytosine Count

1227038 bp

Genome Length

5695001 bp

Protein-coding Genes

5139 genes

Non-Coding Genes

185 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
transcriptional regulatory family proteinM146_2573Not AvailableNegative3148702 - 314939726623.4
his kinase a domain proteinM146_2574Not AvailableNegative3149394 - 315097159543.9
putative tonb-dependent receptorM146_2575Not AvailablePositive3151145 - 315324779879.9
his kinase a domain proteinM146_2576Not AvailableNegative3153274 - 315525676459.3
formate--tetrahydrofolate ligase family proteinM146_2577Not AvailablePositive3155451 - 315711860422.1
hypothetical proteinM146_2578Not AvailableNegative3157412 - 315810425839.4
serine hydroxymethyltransferase family proteinM146_2579Not AvailableNegative3158306 - 315958646860.6
outer membrane beta-barrel domain proteinM146_2580Not AvailableNegative3159694 - 316042228142.8
flavin reductase like domain proteinM146_2581Not AvailableNegative3160419 - 316098821377.8
aspartate carbamoyltransferase, regulatory subunitM146_2582Not AvailableNegative3161074 - 316153517364.4

Displaying genes 2991 – 3000 of 5324 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.