Bacteroides fragilis str. B1 (UDC16-1)

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Bacteroides

Description

Bacteroides fragilis str. B1 (UDC16-1) is a Gram-negative, rod-shaped bacterium characterized as a chemoorganotroph, deriving its energy from organic compounds. This species is strictly anaerobic, thriving in environments devoid of oxygen, which is indicative of its adaptation to host-associated habitats. B. fragilis str. B1 is non-motile and does not possess flagella, which suggests a lifestyle that does not require movement through its environment. Instead, it exists primarily as single cells rather than forming clusters or chains. The bacterium has a mesophilic temperature range, with an optimal growth temperature of 37°C, aligning with the typical mammalian body temperature, further supporting its association with host organisms. Genetically, Bacteroides fragilis str. B1 contains one replicon and has a double-membrane structure. This structural arrangement is typical of Gram-negative bacteria and plays a role in its interactions within the host environment. Ecologically, B. fragilis is described as free-living, which may suggest its role in the gut microbiota where it helps in the digestion of complex polysaccharides and contributes to the overall health of the host. Its presence in the host-associated environment underlines the importance of this organism in maintaining gut homeostasis and its potential implications in health and disease. The accession number for this strain is JGDU00000000.1, which provides a reference for further genetic and genomic studies.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides fragilis
StrainB1 (UDC16-1)

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Bacteroides fragilis str. B1 (UDC16-1)
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Bacteroides fragilis str. B1 (UDC16-1) gbfB1.contig.310, whole

Gene Summary

Adenine Count

2164945 bp

Thymine Count

2165896 bp

Guanine Count

1638080 bp

Cytosine Count

1634486 bp

Genome Length

7603407 bp

Protein-coding Genes

6122 genes

Non-Coding Genes

134 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ferritinM069_5596Not AvailableNegative694261 - 69474018065.4
diaminopimelate decarboxylaseM069_5597Not AvailableNegative694878 - 69600541392.7
hypothetical proteinM069_5598Not AvailablePositive696018 - 6962368587.25
aspartate kinase domain proteinM069_5599Not AvailableNegative696198 - 69751749107.2
abc transporter family proteinM069_5600Not AvailableNegative697549 - 69824726198.7
phosphoribosyl-atp diphosphataseM069_5601Not AvailableNegative698232 - 69884323266.7
imidazoleglycerol phosphate synthase, cyclase subunitM069_5602Not AvailableNegative699032 - 69970924134.5
1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomeraseM069_5603Not AvailableNegative699886 - 70060526118.5
imidazole glycerol phosphate synthase, glutamine amidotransferase subunitM069_5604Not AvailableNegative700645 - 70123522298.9
glycosyl hydrolases 43 family proteinM069_5605Not AvailableNegative702603 - 70358036546.3

Displaying genes 641 – 650 of 6256 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.