Bacteroides fragilis str. B1 (UDC16-1)

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Bacteroides

Description

Bacteroides fragilis str. B1 (UDC16-1) is a Gram-negative, rod-shaped bacterium characterized as a chemoorganotroph, deriving its energy from organic compounds. This species is strictly anaerobic, thriving in environments devoid of oxygen, which is indicative of its adaptation to host-associated habitats. B. fragilis str. B1 is non-motile and does not possess flagella, which suggests a lifestyle that does not require movement through its environment. Instead, it exists primarily as single cells rather than forming clusters or chains. The bacterium has a mesophilic temperature range, with an optimal growth temperature of 37°C, aligning with the typical mammalian body temperature, further supporting its association with host organisms. Genetically, Bacteroides fragilis str. B1 contains one replicon and has a double-membrane structure. This structural arrangement is typical of Gram-negative bacteria and plays a role in its interactions within the host environment. Ecologically, B. fragilis is described as free-living, which may suggest its role in the gut microbiota where it helps in the digestion of complex polysaccharides and contributes to the overall health of the host. Its presence in the host-associated environment underlines the importance of this organism in maintaining gut homeostasis and its potential implications in health and disease. The accession number for this strain is JGDU00000000.1, which provides a reference for further genetic and genomic studies.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides fragilis
StrainB1 (UDC16-1)

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Bacteroides fragilis str. B1 (UDC16-1)
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Bacteroides fragilis str. B1 (UDC16-1) gbfB1.contig.310, whole

Gene Summary

Adenine Count

2164945 bp

Thymine Count

2165896 bp

Guanine Count

1638080 bp

Cytosine Count

1634486 bp

Genome Length

7603407 bp

Protein-coding Genes

6122 genes

Non-Coding Genes

134 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type i phosphodiesterase / nucleotide pyrophosphatase family proteinM069_1078Not AvailableNegative2882039 - 288349055368.9
starch-binding associating with outer membrane family proteinM069_1079Not AvailableNegative2883609 - 288559174560.2
tonb-linked outer membrane, susc/raga family proteinM069_1080Not AvailableNegative2885604 - 2888789118344.0
his kinase a domain proteinM069_1081Not AvailablePositive2888975 - 2893060155716.0
sugar (and other) transporter family proteinM069_1082Not AvailableNegative2893227 - 289461251274.3
alpha-l-fucosidase family proteinM069_1083Not AvailablePositive2895116 - 289646551430.4
peptide-n-glycosidase f, c terminal family proteinM069_1084Not AvailablePositive2896484 - 289773146518.4
uvrd/rep helicase n-terminal domain proteinM069_1085Not AvailableNegative2898052 - 2901513132486.0
acyltransferase family proteinM069_1086Not AvailableNegative2901609 - 290264940699.4
hypothetical proteinM069_1087Not AvailablePositive2902659 - 29027724557.76

Displaying genes 2381 – 2390 of 6256 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.