Bacteroides fragilis str. 3-F-2 #6

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Bacteroides

Description

Bacteroides fragilis str. 3-F-2 #6 is a Gram-negative, rod-shaped bacterium that thrives in host-associated environments. As a chemoorganotroph, it derives energy from organic compounds, which is typical for organisms inhabiting the gut of various hosts. This species is classified as an anaerobe, meaning it thrives in environments devoid of oxygen. Bacteroides fragilis str. 3-F-2 #6 is characterized by its cell arrangement of singles and is non-motile, despite the presence of flagella. The organism has an optimal growth temperature of 37°C, which aligns with the average body temperature of many mammals, suggesting a strong adaptation to its host-associated habitat. It operates within a mesophilic temperature range, indicating that it prefers moderate temperatures for growth. The bacterium contains a single replicon and has a cellular architecture featuring two membranes, which is characteristic of Gram-negative bacteria. In terms of its ecological role, Bacteroides fragilis str. 3-F-2 #6 is free-living, contributing to the microbial ecosystem in the gut. Its presence is significant as it likely participates in the complex interactions that occur within the gut microbiome, aiding in digestion and influencing host health. Overall, the traits of Bacteroides fragilis str. 3-F-2 #6 underscore its specialized adaptation to a host-associated lifestyle and its potential role in maintaining gut homeostasis.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides fragilis
Strain3-F-2 #6

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Bacteroides fragilis str. 3-F-2 #6
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Bacteroides fragilis str. 3-F-2 #6 gbf3F26.contig.202, whole

Gene Summary

Adenine Count

1506949 bp

Thymine Count

1506379 bp

Guanine Count

1146633 bp

Cytosine Count

1140498 bp

Genome Length

5300459 bp

Protein-coding Genes

4786 genes

Non-Coding Genes

127 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
mechanosensitive ion channel family proteinM144_3116Not AvailableNegative3429595 - 343076444043.9
fructose-6-phosphate aldolaseM144_3117Not AvailableNegative3430903 - 343155923688.7
alpha-1,3/4-fucosidase domain proteinM144_3118Not AvailableNegative3431625 - 343344268223.0
beta-galactosidaseM144_3119Not AvailableNegative3433492 - 3436554115719.0
chitobiase/beta-hexosaminidase c-terminal domain proteinM144_3120Not AvailableNegative3436632 - 343884283098.4
type i phosphodiesterase / nucleotide pyrophosphatase family proteinM144_3121Not AvailableNegative3438992 - 344057561634.1
type i phosphodiesterase / nucleotide pyrophosphatase family proteinM144_3122Not AvailablePositive3440990 - 344245655330.8
glycosyl hydrolase family 20, catalytic domain proteinM144_3123Not AvailableNegative3442593 - 344424262470.3
bacterial regulatory helix-turn-helix s, arac family proteinM144_3124Not AvailablePositive3444419 - 3447343111074.0
deoc/lacd aldolase family proteinM144_3125Not AvailableNegative3447419 - 344847138432.9

Displaying genes 3121 – 3130 of 4913 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.