Bacteroides fragilis str. 2-F-2 #4

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Bacteroides

Description

Bacteroides fragilis str. 2-F-2 #4 is a Gram-negative, rod-shaped bacterium that operates as a chemoorganotroph, deriving energy from organic compounds. This organism is classified as an anaerobe, indicating that it does not require oxygen for growth, and thrives optimally at a temperature of 37°C, within a mesophilic temperature range. The bacterium typically exists as single cells, lacking mobility, which is consistent with its absence of flagella despite their presence in some strains. Bacteroides fragilis str. 2-F-2 #4 has a unique biotic relationship, being free-living yet host-associated, suggesting its potential role in the microbiome or other ecological niches within host organisms. With a single replicon and a double membrane structure, this strain aligns with the characteristics of many members of the Bacteroides genus, which are known for their significant contributions to gut health and microbial diversity. The strain's accessions include JGDM00000000.1, indicating its identification within genomic databases. The ecological insight drawn from the traits of Bacteroides fragilis str. 2-F-2 #4 is its potential importance in maintaining the balance of microbial communities in host-associated environments, particularly in anaerobic conditions where it may play a role in organic matter degradation and nutrient cycling. This highlights the significance of Bacteroides species in health and disease states, underscoring their contributions to the gut microbiome.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides fragilis
Strain2-F-2 #4

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Bacteroides fragilis str. 2-F-2 #4
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Bacteroides fragilis str. 2-F-2 #4 gbf2F24.contig.216, whole

Gene Summary

Adenine Count

1575449 bp

Thymine Count

1580463 bp

Guanine Count

1211202 bp

Cytosine Count

1209474 bp

Genome Length

5576588 bp

Protein-coding Genes

5124 genes

Non-Coding Genes

92 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinM076_0884Not AvailablePositive1069238 - 106952811217.8
php domain proteinM076_0885Not AvailableNegative1069651 - 107040329356.7
5-formyltetrahydrofolate cyclo-ligaseM076_0886Not AvailableNegative1070436 - 107081313968.8
c-terminal processing peptidase family proteinM076_0887Not AvailableNegative1070896 - 107262364171.9
cytidine and deoxycytidylate deaminase zinc-binding region family proteinM076_0888Not AvailableNegative1072701 - 107308714136.8
hypothetical proteinM076_0889Not AvailableNegative1073150 - 107365919219.4
peptidase m3 family proteinM076_0890Not AvailableNegative1073666 - 107572378478.2
glyceraldehyde-3-phosphate dehydrogenase, type iM076_0891Not AvailableNegative1075947 - 107694835664.8
large conductance mechanosensitive channel proteinM076_0892Not AvailablePositive1077130 - 107752814092.5
gmp synthase (glutamine-hydrolyzing)M076_0893Not AvailablePositive1077559 - 107908256439.8

Displaying genes 891 – 900 of 5216 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.