Bacteroides fragilis str. 2-F-2 #4

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Bacteroides

Description

Bacteroides fragilis str. 2-F-2 #4 is a Gram-negative, rod-shaped bacterium that operates as a chemoorganotroph, deriving energy from organic compounds. This organism is classified as an anaerobe, indicating that it does not require oxygen for growth, and thrives optimally at a temperature of 37°C, within a mesophilic temperature range. The bacterium typically exists as single cells, lacking mobility, which is consistent with its absence of flagella despite their presence in some strains. Bacteroides fragilis str. 2-F-2 #4 has a unique biotic relationship, being free-living yet host-associated, suggesting its potential role in the microbiome or other ecological niches within host organisms. With a single replicon and a double membrane structure, this strain aligns with the characteristics of many members of the Bacteroides genus, which are known for their significant contributions to gut health and microbial diversity. The strain's accessions include JGDM00000000.1, indicating its identification within genomic databases. The ecological insight drawn from the traits of Bacteroides fragilis str. 2-F-2 #4 is its potential importance in maintaining the balance of microbial communities in host-associated environments, particularly in anaerobic conditions where it may play a role in organic matter degradation and nutrient cycling. This highlights the significance of Bacteroides species in health and disease states, underscoring their contributions to the gut microbiome.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides fragilis
Strain2-F-2 #4

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Bacteroides fragilis str. 2-F-2 #4
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Bacteroides fragilis str. 2-F-2 #4 gbf2F24.contig.216, whole

Gene Summary

Adenine Count

1575449 bp

Thymine Count

1580463 bp

Guanine Count

1211202 bp

Cytosine Count

1209474 bp

Genome Length

5576588 bp

Protein-coding Genes

5124 genes

Non-Coding Genes

92 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
3-isopropylmalate dehydratase, large subunitM076_3408Not AvailableNegative3738782 - 374017650524.6
2-isopropylmalate synthaseM076_3409Not AvailableNegative3740224 - 374172054406.0
hypothetical proteinM076_3410Not AvailablePositive3742201 - 37424589055.76
Trna-alaNot AvailableNot AvailablePositive3743399 - 3743475Not Available
Trna-ileNot AvailableNot AvailablePositive3743504 - 3743580Not Available
rubrerythrin family proteinM076_3414Not AvailablePositive3744974 - 374548619583.1
signal peptide peptidase sppa, 67k typeM076_3415Not AvailablePositive3745724 - 374750265104.8
tetraacyldisaccharide 4'-kinaseM076_3416Not AvailablePositive3747511 - 374864143108.9
purine nucleoside phosphorylase i, inosine and guanosine-specificM076_3417Not AvailablePositive3748625 - 374938927988.8
thiamine-monophosphate kinaseM076_3418Not AvailablePositive3749417 - 375045137984.3

Displaying genes 3411 – 3420 of 5216 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.