Bacteroides fragilis str. 2-F-2 #4

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Bacteroides

Description

Bacteroides fragilis str. 2-F-2 #4 is a Gram-negative, rod-shaped bacterium that operates as a chemoorganotroph, deriving energy from organic compounds. This organism is classified as an anaerobe, indicating that it does not require oxygen for growth, and thrives optimally at a temperature of 37°C, within a mesophilic temperature range. The bacterium typically exists as single cells, lacking mobility, which is consistent with its absence of flagella despite their presence in some strains. Bacteroides fragilis str. 2-F-2 #4 has a unique biotic relationship, being free-living yet host-associated, suggesting its potential role in the microbiome or other ecological niches within host organisms. With a single replicon and a double membrane structure, this strain aligns with the characteristics of many members of the Bacteroides genus, which are known for their significant contributions to gut health and microbial diversity. The strain's accessions include JGDM00000000.1, indicating its identification within genomic databases. The ecological insight drawn from the traits of Bacteroides fragilis str. 2-F-2 #4 is its potential importance in maintaining the balance of microbial communities in host-associated environments, particularly in anaerobic conditions where it may play a role in organic matter degradation and nutrient cycling. This highlights the significance of Bacteroides species in health and disease states, underscoring their contributions to the gut microbiome.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides fragilis
Strain2-F-2 #4

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Bacteroides fragilis str. 2-F-2 #4
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Bacteroides fragilis str. 2-F-2 #4 gbf2F24.contig.216, whole

Gene Summary

Adenine Count

1575449 bp

Thymine Count

1580463 bp

Guanine Count

1211202 bp

Cytosine Count

1209474 bp

Genome Length

5576588 bp

Protein-coding Genes

5124 genes

Non-Coding Genes

92 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinM076_1313Not AvailablePositive1519342 - 15194855418.67
haloacid dehalogenase-like hydrolase domain proteinM076_1314Not AvailablePositive1519613 - 152084544916.2
isochorismate synthase family proteinM076_1315Not AvailablePositive1520842 - 152194841862.7
2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthaseM076_1316Not AvailablePositive1521969 - 152363662661.5
hypothetical proteinM076_1317Not AvailablePositive1523641 - 152464238090.6
naphthoate synthaseM076_1318Not AvailablePositive1524664 - 152548830408.4
mandelate racemase / muconate lactonizing enzyme, c-terminal domain proteinM076_1319Not AvailablePositive1525537 - 152655638222.1
amp-binding enzyme family proteinM076_1320Not AvailablePositive1526600 - 152766439051.9
endonuclease/exonuclease/phosphatase family proteinM076_1321Not AvailablePositive1527735 - 152859232325.3
glycoside hydrolase 97 family proteinM076_1322Not AvailablePositive1528615 - 153063076405.2

Displaying genes 1321 – 1330 of 5216 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.