Bacteroides fragilis str. J-143-4

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Bacteroides

Description

Bacteroides fragilis str. J-143-4 is a Gram-negative, rod-shaped bacterium classified as a chemoorganotroph, utilizing organic compounds as its energy source. This species is an anaerobe, thriving in environments devoid of oxygen, which is typical for many members of the Bacteroides genus. It is characterized by its single-cell arrangement, lacking mobility, as indicated by its absence of flagella, despite their presence in some other strains. The optimal growth temperature for Bacteroides fragilis str. J-143-4 is 37°C, placing it within the mesophilic temperature range, which is conducive to human and animal host environments. This bacterium has a biotic relationship that is categorized as free-living, suggesting its role in various ecological contexts, potentially including gut microbiota. With a single replicon and a double membrane structure, Bacteroides fragilis str. J-143-4 is representative of the complexity found within Gram-negative organisms. The accession number JGDH00000000.1 provides a reference for genomic information. Ecologically, Bacteroides fragilis species, including strain J-143-4, are significant members of the gut microbiome, contributing to nutrient metabolism and the maintenance of intestinal health. Their ability to thrive in anaerobic conditions and their role as chemoorganotrophs highlight their importance in organic matter decomposition and nutrient cycling within host-associated environments.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides fragilis
StrainJ-143-4

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Bacteroides fragilis str. J-143-4
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Bacteroides fragilis str. J-143-4 gbfJ1434.contig.274, whole

Gene Summary

Adenine Count

1569177 bp

Thymine Count

1570675 bp

Guanine Count

1194027 bp

Cytosine Count

1187508 bp

Genome Length

5521387 bp

Protein-coding Genes

5056 genes

Non-Coding Genes

105 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
beta-lactamase family proteinM067_3421Not AvailablePositive3793287 - 379490059175.2
hypothetical proteinM067_3422Not AvailableNegative3794977 - 37951386116.55
inosine-5'-monophosphate dehydrogenaseM067_3423Not AvailableNegative3795296 - 379678954561.3
ycii-related domain proteinM067_3424Not AvailableNegative3797020 - 379730710609.0
hypothetical proteinM067_3425Not AvailablePositive3797485 - 37977188802.52
bacterial regulatory helix-turn-helix s, arac family proteinM067_3426Not AvailableNegative3797743 - 379858832310.8
efflux transporter, rnd family, mfp subunitM067_3427Not AvailablePositive3798739 - 379985439800.5
rnd transporter, hydrophobe/amphiphile efflux-1 family proteinM067_3428Not AvailablePositive3800000 - 3803143114507.0
efflux transporter, outer membrane factor (omf) lipo, nodt family proteinM067_3429Not AvailablePositive3803154 - 380458151418.9
o-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family proteinM067_3430Not AvailableNegative3804730 - 380601046456.3

Displaying genes 3421 – 3430 of 5161 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.