Bacteroides fragilis str. J-143-4

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Bacteroides

Description

Bacteroides fragilis str. J-143-4 is a Gram-negative, rod-shaped bacterium classified as a chemoorganotroph, utilizing organic compounds as its energy source. This species is an anaerobe, thriving in environments devoid of oxygen, which is typical for many members of the Bacteroides genus. It is characterized by its single-cell arrangement, lacking mobility, as indicated by its absence of flagella, despite their presence in some other strains. The optimal growth temperature for Bacteroides fragilis str. J-143-4 is 37°C, placing it within the mesophilic temperature range, which is conducive to human and animal host environments. This bacterium has a biotic relationship that is categorized as free-living, suggesting its role in various ecological contexts, potentially including gut microbiota. With a single replicon and a double membrane structure, Bacteroides fragilis str. J-143-4 is representative of the complexity found within Gram-negative organisms. The accession number JGDH00000000.1 provides a reference for genomic information. Ecologically, Bacteroides fragilis species, including strain J-143-4, are significant members of the gut microbiome, contributing to nutrient metabolism and the maintenance of intestinal health. Their ability to thrive in anaerobic conditions and their role as chemoorganotrophs highlight their importance in organic matter decomposition and nutrient cycling within host-associated environments.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides fragilis
StrainJ-143-4

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Bacteroides fragilis str. J-143-4
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Bacteroides fragilis str. J-143-4 gbfJ1434.contig.274, whole

Gene Summary

Adenine Count

1569177 bp

Thymine Count

1570675 bp

Guanine Count

1194027 bp

Cytosine Count

1187508 bp

Genome Length

5521387 bp

Protein-coding Genes

5056 genes

Non-Coding Genes

105 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glycosyl hydrolase family 3 c-terminal domain proteinM067_2919Not AvailableNegative3229597 - 323217695395.0
uroporphyrinogen decarboxylase family proteinM067_2920Not AvailableNegative3232195 - 323319936813.5
vitamin b12 dependent methionine synthase, activation domain proteinM067_2921Not AvailableNegative3233208 - 323389125571.9
b12 binding domain proteinM067_2922Not AvailableNegative3233893 - 323452222138.1
uroporphyrinogen decarboxylase family proteinM067_2923Not AvailableNegative3234552 - 323580246403.4
glycosyl hydrolase family 3 c-terminal domain proteinM067_2924Not AvailableNegative3235816 - 323812284125.8
beta-glucosidase domain proteinM067_2925Not AvailableNegative3238134 - 323840010017.3
starch-binding associating with outer membrane family proteinM067_2926Not AvailableNegative3238572 - 324026064322.9
tonb-linked outer membrane, susc/raga family proteinM067_2927Not AvailableNegative3240281 - 3243616123387.0
fecr family proteinM067_2928Not AvailableNegative3243747 - 324477238960.9

Displaying genes 2921 – 2930 of 5161 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.