Bacteroides fragilis str. J-143-4

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Bacteroides

Description

Bacteroides fragilis str. J-143-4 is a Gram-negative, rod-shaped bacterium classified as a chemoorganotroph, utilizing organic compounds as its energy source. This species is an anaerobe, thriving in environments devoid of oxygen, which is typical for many members of the Bacteroides genus. It is characterized by its single-cell arrangement, lacking mobility, as indicated by its absence of flagella, despite their presence in some other strains. The optimal growth temperature for Bacteroides fragilis str. J-143-4 is 37°C, placing it within the mesophilic temperature range, which is conducive to human and animal host environments. This bacterium has a biotic relationship that is categorized as free-living, suggesting its role in various ecological contexts, potentially including gut microbiota. With a single replicon and a double membrane structure, Bacteroides fragilis str. J-143-4 is representative of the complexity found within Gram-negative organisms. The accession number JGDH00000000.1 provides a reference for genomic information. Ecologically, Bacteroides fragilis species, including strain J-143-4, are significant members of the gut microbiome, contributing to nutrient metabolism and the maintenance of intestinal health. Their ability to thrive in anaerobic conditions and their role as chemoorganotrophs highlight their importance in organic matter decomposition and nutrient cycling within host-associated environments.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides fragilis
StrainJ-143-4

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Bacteroides fragilis str. J-143-4
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Bacteroides fragilis str. J-143-4 gbfJ1434.contig.274, whole

Gene Summary

Adenine Count

1569177 bp

Thymine Count

1570675 bp

Guanine Count

1194027 bp

Cytosine Count

1187508 bp

Genome Length

5521387 bp

Protein-coding Genes

5056 genes

Non-Coding Genes

105 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
polysaccharide lyase family 8, super-sandwich domain proteinM067_1683Not AvailableNegative1916783 - 191880777430.2
l-fucose isomerase, c-terminal domain proteinM067_1684Not AvailableNegative1918891 - 192012645954.0
aminotransferase class-v family proteinM067_1685Not AvailablePositive1920297 - 192149644719.7
ftsx-like permease family proteinM067_1686Not AvailablePositive1921569 - 192281346492.2
glycosyl transferase 2 family proteinM067_1687Not AvailableNegative1922819 - 192399145035.4
hypothetical proteinM067_1688Not AvailableNegative1924062 - 192506036454.4
histidine kinase-, dna gyrase b-, and hsp90-like atpase family proteinM067_1689Not AvailableNegative1925129 - 192637947343.4
bacterial regulatory, fis family proteinM067_1690Not AvailableNegative1926385 - 192772250078.9
outer membrane efflux family proteinM067_1691Not AvailablePositive1928003 - 192932251029.4
efflux transporter, rnd family, mfp subunitM067_1692Not AvailablePositive1929462 - 193070947521.1

Displaying genes 1691 – 1700 of 5161 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.