Bacteroides fragilis str. DS-208

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Bacteroides

Description

Bacteroides fragilis str. DS-208 is a gram-negative, rod-shaped bacterium that is classified as an anaerobic chemoorganotroph. This organism is part of the Bacteroidetes phylum and is characterized by its habitat as host-associated, indicating its presence in the gastrointestinal tract of mammals. It exhibits a unique cell arrangement, occurring as singles rather than in clusters or chains. This strain has a mesophilic temperature range, with an optimal growth temperature of 37°C. Bacteroides fragilis str. DS-208 does not possess mobility, as it lacks flagella, but it has a complex cellular structure with two membranes and a single replicon. As a free-living organism, Bacteroides fragilis str. DS-208 plays a crucial role in the gut microbiome, contributing to the breakdown of complex carbohydrates and facilitating nutrient absorption in the host. Its anaerobic nature aligns with the oxygen-poor environment of the intestines, where it thrives by utilizing organic compounds as energy sources. Understanding the traits of Bacteroides fragilis str. DS-208 provides insight into its ecological role in maintaining gut health and its potential implications in human health and disease, particularly in relation to gut microbiota composition and function. The accession number for this strain is JGDE00000000.1.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides fragilis
StrainDS-208

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Bacteroides fragilis str. DS-208
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Bacteroides fragilis str. DS-208 gbfDS208.contig.279, whole genome

Gene Summary

Adenine Count

1427439 bp

Thymine Count

1423256 bp

Guanine Count

1097719 bp

Cytosine Count

1102885 bp

Genome Length

5051299 bp

Protein-coding Genes

4562 genes

Non-Coding Genes

111 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
zinc-dependent metalloase lipoprotein, bf0631 familyM072_0583Not AvailableNegative677784 - 67909448860.7
biotin--[acetyl-coa-carboxylase] ligaseM072_0584Not AvailableNegative679160 - 67991228543.2
hypothetical proteinM072_0585Not AvailableNegative679899 - 68017110766.9
nuclease-related domain proteinM072_0586Not AvailableNegative680262 - 68062713948.7
hypothetical proteinM072_0587Not AvailablePositive680765 - 6809989603.62
cytidine and deoxycytidylate deaminase zinc-binding region family proteinM072_0588Not AvailablePositive681003 - 68144015747.2
hypothetical proteinM072_0589Not AvailableNegative681457 - 68174410528.5
cdp-diacylglycerol-serine o-phosphatidyltransferaseM072_0590Not AvailableNegative681807 - 68251726360.0
phosphatidylserine decarboxylase family proteinM072_0591Not AvailableNegative682527 - 68321326018.3
dna polymerase iii, alpha subunitM072_0592Not AvailablePositive683377 - 687171142988.0

Displaying genes 601 – 610 of 4673 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.