Bacteroides fragilis str. DS-208

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Bacteroides

Description

Bacteroides fragilis str. DS-208 is a gram-negative, rod-shaped bacterium that is classified as an anaerobic chemoorganotroph. This organism is part of the Bacteroidetes phylum and is characterized by its habitat as host-associated, indicating its presence in the gastrointestinal tract of mammals. It exhibits a unique cell arrangement, occurring as singles rather than in clusters or chains. This strain has a mesophilic temperature range, with an optimal growth temperature of 37°C. Bacteroides fragilis str. DS-208 does not possess mobility, as it lacks flagella, but it has a complex cellular structure with two membranes and a single replicon. As a free-living organism, Bacteroides fragilis str. DS-208 plays a crucial role in the gut microbiome, contributing to the breakdown of complex carbohydrates and facilitating nutrient absorption in the host. Its anaerobic nature aligns with the oxygen-poor environment of the intestines, where it thrives by utilizing organic compounds as energy sources. Understanding the traits of Bacteroides fragilis str. DS-208 provides insight into its ecological role in maintaining gut health and its potential implications in human health and disease, particularly in relation to gut microbiota composition and function. The accession number for this strain is JGDE00000000.1.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides fragilis
StrainDS-208

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Bacteroides fragilis str. DS-208
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Bacteroides fragilis str. DS-208 gbfDS208.contig.279, whole genome

Gene Summary

Adenine Count

1427439 bp

Thymine Count

1423256 bp

Guanine Count

1097719 bp

Cytosine Count

1102885 bp

Genome Length

5051299 bp

Protein-coding Genes

4562 genes

Non-Coding Genes

111 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type i restriction modification dna specificity domain proteinM072_4617Not AvailablePositive4966254 - 496691625740.1
type i restriction modification dna specificity domain proteinM072_4618Not AvailableNegative4966909 - 496807243213.7
exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase family proteinM072_4619Not AvailablePositive4969017 - 496967625905.7
polysaccharide biosynthesis/export family proteinM072_4620Not AvailablePositive4969733 - 497019617044.8
hypothetical proteinM072_4621Not AvailableNegative4970197 - 497095929033.8
type iv secretory system conjugative dna transfer family proteinM072_4622Not AvailableNegative4971999 - 497360361019.5
hypothetical proteinM072_4623Not AvailableNegative4973695 - 497404813245.0
hypothetical proteinM072_4624Not AvailableNegative4974059 - 497622581075.7
radical sam peptide maturase, gg-bacteroidales familyM072_4625Not AvailableNegative4976226 - 497750550036.9
istb-like atp binding family proteinM072_4626Not AvailableNegative4977532 - 497787612701.8

Displaying genes 4601 – 4610 of 4673 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.