Bacteroides fragilis str. DS-208

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Bacteroides

Description

Bacteroides fragilis str. DS-208 is a gram-negative, rod-shaped bacterium that is classified as an anaerobic chemoorganotroph. This organism is part of the Bacteroidetes phylum and is characterized by its habitat as host-associated, indicating its presence in the gastrointestinal tract of mammals. It exhibits a unique cell arrangement, occurring as singles rather than in clusters or chains. This strain has a mesophilic temperature range, with an optimal growth temperature of 37°C. Bacteroides fragilis str. DS-208 does not possess mobility, as it lacks flagella, but it has a complex cellular structure with two membranes and a single replicon. As a free-living organism, Bacteroides fragilis str. DS-208 plays a crucial role in the gut microbiome, contributing to the breakdown of complex carbohydrates and facilitating nutrient absorption in the host. Its anaerobic nature aligns with the oxygen-poor environment of the intestines, where it thrives by utilizing organic compounds as energy sources. Understanding the traits of Bacteroides fragilis str. DS-208 provides insight into its ecological role in maintaining gut health and its potential implications in human health and disease, particularly in relation to gut microbiota composition and function. The accession number for this strain is JGDE00000000.1.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides fragilis
StrainDS-208

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Bacteroides fragilis str. DS-208
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Bacteroides fragilis str. DS-208 gbfDS208.contig.279, whole genome

Gene Summary

Adenine Count

1427439 bp

Thymine Count

1423256 bp

Guanine Count

1097719 bp

Cytosine Count

1102885 bp

Genome Length

5051299 bp

Protein-coding Genes

4562 genes

Non-Coding Genes

111 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinM072_3601Not AvailableNegative3932567 - 39326894658.58
heavy metal efflux pump, czca family proteinM072_3602Not AvailablePositive3932699 - 3937018160380.0
hlyd secretion family proteinM072_3603Not AvailablePositive3937040 - 393763021143.7
hlyd secretion family proteinM072_3604Not AvailablePositive3937633 - 393792610814.2
histidine kinase family proteinM072_3605Not AvailablePositive3937955 - 393901641299.5
response regulatorM072_3606Not AvailablePositive3939013 - 393979229672.9
[fefe] hydrogenase, group b1/b3 family proteinM072_3607Not AvailablePositive3939881 - 394135054425.8
[fefe] hydrogenase h-cluster radical sam maturase hydeM072_3608Not AvailablePositive3941331 - 394236839808.9
[fefe] hydrogenase h-cluster radical sam maturase hydgM072_3609Not AvailablePositive3942381 - 394379953625.2
[fefe] hydrogenase h-cluster maturation gtpase hydfM072_3610Not AvailablePositive3943796 - 394497143569.8

Displaying genes 3611 – 3620 of 4673 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.