Bacteroides fragilis str. DS-208

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Bacteroides

Description

Bacteroides fragilis str. DS-208 is a gram-negative, rod-shaped bacterium that is classified as an anaerobic chemoorganotroph. This organism is part of the Bacteroidetes phylum and is characterized by its habitat as host-associated, indicating its presence in the gastrointestinal tract of mammals. It exhibits a unique cell arrangement, occurring as singles rather than in clusters or chains. This strain has a mesophilic temperature range, with an optimal growth temperature of 37°C. Bacteroides fragilis str. DS-208 does not possess mobility, as it lacks flagella, but it has a complex cellular structure with two membranes and a single replicon. As a free-living organism, Bacteroides fragilis str. DS-208 plays a crucial role in the gut microbiome, contributing to the breakdown of complex carbohydrates and facilitating nutrient absorption in the host. Its anaerobic nature aligns with the oxygen-poor environment of the intestines, where it thrives by utilizing organic compounds as energy sources. Understanding the traits of Bacteroides fragilis str. DS-208 provides insight into its ecological role in maintaining gut health and its potential implications in human health and disease, particularly in relation to gut microbiota composition and function. The accession number for this strain is JGDE00000000.1.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides fragilis
StrainDS-208

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Bacteroides fragilis str. DS-208
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Bacteroides fragilis str. DS-208 gbfDS208.contig.279, whole genome

Gene Summary

Adenine Count

1427439 bp

Thymine Count

1423256 bp

Guanine Count

1097719 bp

Cytosine Count

1102885 bp

Genome Length

5051299 bp

Protein-coding Genes

4562 genes

Non-Coding Genes

111 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
deoc/lacd aldolase family proteinM072_2999Not AvailableNegative3262078 - 326313038342.8
phosphoglycerate mutase 1 family proteinM072_3000Not AvailableNegative3263278 - 326402428804.3
right handed beta helix region family proteinM072_3001Not AvailablePositive3264181 - 326652388730.9
hypothetical proteinM072_3002Not AvailablePositive3266530 - 32666494537.41
abc transporter family proteinM072_3003Not AvailableNegative3266663 - 326811754964.3
type i phosphodiesterase / nucleotide pyrophosphatase family proteinM072_3004Not AvailableNegative3268259 - 326977357049.9
glycosyl hydrolase family 20, catalytic domain proteinM072_3005Not AvailableNegative3269789 - 327134560069.0
starch-binding associating with outer membrane family proteinM072_3006Not AvailableNegative3271446 - 327331171879.1
tonb-linked outer membrane, susc/raga family proteinM072_3007Not AvailableNegative3273326 - 3276763129222.0
hypothetical proteinM072_3008Not AvailablePositive3276824 - 32769494473.32

Displaying genes 3011 – 3020 of 4673 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.