Bacteroides fragilis str. DS-208

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Bacteroides

Description

Bacteroides fragilis str. DS-208 is a gram-negative, rod-shaped bacterium that is classified as an anaerobic chemoorganotroph. This organism is part of the Bacteroidetes phylum and is characterized by its habitat as host-associated, indicating its presence in the gastrointestinal tract of mammals. It exhibits a unique cell arrangement, occurring as singles rather than in clusters or chains. This strain has a mesophilic temperature range, with an optimal growth temperature of 37°C. Bacteroides fragilis str. DS-208 does not possess mobility, as it lacks flagella, but it has a complex cellular structure with two membranes and a single replicon. As a free-living organism, Bacteroides fragilis str. DS-208 plays a crucial role in the gut microbiome, contributing to the breakdown of complex carbohydrates and facilitating nutrient absorption in the host. Its anaerobic nature aligns with the oxygen-poor environment of the intestines, where it thrives by utilizing organic compounds as energy sources. Understanding the traits of Bacteroides fragilis str. DS-208 provides insight into its ecological role in maintaining gut health and its potential implications in human health and disease, particularly in relation to gut microbiota composition and function. The accession number for this strain is JGDE00000000.1.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides fragilis
StrainDS-208

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Bacteroides fragilis str. DS-208
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Bacteroides fragilis str. DS-208 gbfDS208.contig.279, whole genome

Gene Summary

Adenine Count

1427439 bp

Thymine Count

1423256 bp

Guanine Count

1097719 bp

Cytosine Count

1102885 bp

Genome Length

5051299 bp

Protein-coding Genes

4562 genes

Non-Coding Genes

111 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
endonuclease/exonuclease/phosphatase family proteinM072_2989Not AvailablePositive3243250 - 324428439658.6
mechanosensitive ion channel family proteinM072_2990Not AvailableNegative3244269 - 324543844043.9
fructose-6-phosphate aldolaseM072_2991Not AvailableNegative3245576 - 324623223688.7
alpha-1,3/4-fucosidase domain proteinM072_2992Not AvailableNegative3246298 - 324811568223.0
beta-galactosidaseM072_2993Not AvailableNegative3248165 - 3251227115761.0
chitobiase/beta-hexosaminidase c-terminal domain proteinM072_2994Not AvailableNegative3251305 - 325362086958.4
type i phosphodiesterase / nucleotide pyrophosphatase family proteinM072_2995Not AvailableNegative3253665 - 325524861661.1
type i phosphodiesterase / nucleotide pyrophosphatase family proteinM072_2996Not AvailablePositive3255663 - 325712955332.8
glycosyl hydrolase family 20, catalytic domain proteinM072_2997Not AvailableNegative3257252 - 325890162408.3
bacterial regulatory helix-turn-helix s, arac family proteinM072_2998Not AvailablePositive3259078 - 3262002111160.0

Displaying genes 3001 – 3010 of 4673 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.