Sphingobium herbicidovorans NBRC 16415

aerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium herbicidovorans NBRC 16415 is an aerobic bacterium known for its ability to degrade herbicides. This characteristic positions it as a valuable organism for bioremediation efforts, particularly in environments contaminated with herbicides. The presence of flagella indicates that this bacterium has the capability for motility, which may enhance its access to herbicide pollutants in various habitats. Sphingobium herbicidovorans has a single replicon, as indicated by its genomic data. The accession number JFZA00000000.2 provides a reference for its genetic sequence, which can be instrumental for researchers studying its metabolic pathways and degradation mechanisms. Understanding the traits of Sphingobium herbicidovorans contributes to the broader field of environmental microbiology, particularly in the context of microbial ecology and the role of bacteria in detoxifying harmful substances. Its aerobic nature and motility suggest that it can thrive in oxygen-rich environments, potentially leading to effective degradation processes in soils and waters affected by agricultural runoff. This bacterium exemplifies the potential of utilizing specific microbial strains for ecological restoration and highlights the importance of studying microbial communities in contaminated sites.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium herbicidovorans
StrainNBRC 16415

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium herbicidovorans NBRC 16415 contig000062, whole genome

Gene Summary

Adenine Count

756013 bp

Thymine Count

758507 bp

Guanine Count

1269115 bp

Cytosine Count

1248691 bp

Genome Length

4032326 bp

Protein-coding Genes

3880 genes

Non-Coding Genes

98 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
membrane proteinBV98_000664Not AvailablePositive658569 - 65911420443.4
tetr family transcriptional regulatorBV98_000665Not AvailableNegative659322 - 65988820793.0
short-chain dehydrogenaseBV98_000666Not AvailablePositive659958 - 66078829442.0
magnesium transporterBV98_000667Not AvailablePositive661238 - 66220636341.3
chey-like response regulatorBV98_000668Not AvailableNegative662268 - 66272016720.3
chemotaxis protein cheyBV98_000669Not AvailableNegative662757 - 66338022184.0
two-protein, nitrogen fixation sensor protein fixlBV98_000670Not AvailableNegative663370 - 66490556500.5
hypothetical proteinBV98_000671Not AvailableNegative664965 - 66543817684.3
copper resistance protein copb precursorBV98_000672Not AvailableNegative665529 - 66671642522.2
copa family copper-resistance protein precursorBV98_000673Not AvailableNegative666713 - 66864169615.5

Displaying genes 731 – 740 of 3978 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4 records
Metabolite IDMetabolite nameStructureCAS number
BASm0005629(R)-2-(4-chloro-2-methylphenoxy)propanoateC10H10ClO3Chemical structure of (R)-2-(4-chloro-2-methylphenoxy)propanoateNot available
Average213.64Da
Monoisotopic213.0323955Da
BASm0005630(S)-2-(4-chloro-2-methylphenoxy)propanoateC10H10ClO3Chemical structure of (S)-2-(4-chloro-2-methylphenoxy)propanoateNot available
Average213.64Da
Monoisotopic213.0323955Da
BASm0005631(S)-(2,4-dichlorophenoxy)propanoateC9H7Cl2O3Chemical structure of (S)-(2,4-dichlorophenoxy)propanoateNot available
Average234.05Da
Monoisotopic232.9777731Da
BASm0040319Sphingobium herbicidovorans NBRC 16415Not availableNot availableNot available

Displaying 1–4 of 4 metabolites

Health Effects

No health effects information available for this bacterium.