Sphingobium herbicidovorans NBRC 16415

aerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Sphingobium herbicidovorans NBRC 16415 is an aerobic bacterium known for its ability to degrade herbicides. This characteristic positions it as a valuable organism for bioremediation efforts, particularly in environments contaminated with herbicides. The presence of flagella indicates that this bacterium has the capability for motility, which may enhance its access to herbicide pollutants in various habitats. Sphingobium herbicidovorans has a single replicon, as indicated by its genomic data. The accession number JFZA00000000.2 provides a reference for its genetic sequence, which can be instrumental for researchers studying its metabolic pathways and degradation mechanisms. Understanding the traits of Sphingobium herbicidovorans contributes to the broader field of environmental microbiology, particularly in the context of microbial ecology and the role of bacteria in detoxifying harmful substances. Its aerobic nature and motility suggest that it can thrive in oxygen-rich environments, potentially leading to effective degradation processes in soils and waters affected by agricultural runoff. This bacterium exemplifies the potential of utilizing specific microbial strains for ecological restoration and highlights the importance of studying microbial communities in contaminated sites.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium herbicidovorans
StrainNBRC 16415

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium herbicidovorans NBRC 16415 contig000062, whole genome

Gene Summary

Adenine Count

756013 bp

Thymine Count

758507 bp

Guanine Count

1269115 bp

Cytosine Count

1248691 bp

Genome Length

4032326 bp

Protein-coding Genes

3880 genes

Non-Coding Genes

98 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cytochrome c biogenesis protein ccmeBV98_000144Not AvailableNegative151208 - 15199927815.5
patatinBV98_000145Not AvailableNegative151996 - 15317443150.8
zinc metalloproteaseBV98_000146Not AvailablePositive153319 - 15419431227.8
ppe-repeat proteinBV98_000147Not AvailableNegative154204 - 15453611073.1
hypothetical proteinBV98_000148Not AvailablePositive154617 - 1547755827.87
glutamate-ammonia ligase adenylyltransferaseBV98_000149Not AvailablePositive154875 - 15759598844.8
thiol peroxidase, bcp-typeBV98_000150Not AvailablePositive157579 - 15804016392.6
rhamnosyltransferaseBV98_000151Not AvailablePositive158037 - 15884629641.8
membrane protein precursorBV98_000152Not AvailablePositive158955 - 15967725050.8
heme biosynthesis protein hemyBV98_000153Not AvailablePositive159767 - 16009310834.8

Displaying genes 231 – 240 of 3978 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4 records
Metabolite IDMetabolite nameStructureCAS number
BASm0005629(R)-2-(4-chloro-2-methylphenoxy)propanoateC10H10ClO3Chemical structure of (R)-2-(4-chloro-2-methylphenoxy)propanoateNot available
Average213.64Da
Monoisotopic213.0323955Da
BASm0005630(S)-2-(4-chloro-2-methylphenoxy)propanoateC10H10ClO3Chemical structure of (S)-2-(4-chloro-2-methylphenoxy)propanoateNot available
Average213.64Da
Monoisotopic213.0323955Da
BASm0005631(S)-(2,4-dichlorophenoxy)propanoateC9H7Cl2O3Chemical structure of (S)-(2,4-dichlorophenoxy)propanoateNot available
Average234.05Da
Monoisotopic232.9777731Da
BASm0040319Sphingobium herbicidovorans NBRC 16415Not availableNot availableNot available

Displaying 1–4 of 4 metabolites

Health Effects

No health effects information available for this bacterium.