Pseudomonas sp. RIT357

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. RIT357 is characterized by having a single replicon, which is crucial for its genomic stability and replication. The strain is cataloged under the accession number JFYX00000000.1, indicating its genomic sequence is publicly available for research and analysis. Pseudomonas species are known for their metabolic diversity and ability to thrive in various environments, including soil and water. This versatility suggests that Pseudomonas sp. RIT357 may play a role in nutrient cycling and ecological interactions in its native habitat. The single replicon structure might reflect a streamlined genetic configuration, potentially allowing for efficient adaptation and survival. Furthermore, the genomic data associated with this strain can provide insights into its potential applications in biotechnology, such as bioremediation or agriculture, where Pseudomonas species are often employed due to their ability to degrade pollutants or promote plant growth. Overall, understanding the traits of Pseudomonas sp. RIT357, including its genomic structure, can contribute to a broader understanding of its ecological role and potential utility in environmental and industrial applications.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. RIT357
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. RIT357
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. RIT357 contigs9, whole genome shotgun sequence.

Gene Summary

Adenine Count

1238987 bp

Thymine Count

1245200 bp

Guanine Count

1850757 bp

Cytosine Count

1843524 bp

Genome Length

6178468 bp

Protein-coding Genes

5399 genes

Non-Coding Genes

229 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hydroxymethylglutaryl-coa lyaseBW43_04325Not AvailablePositive4728352 - 472926631619.7
leucine-rich repeat domain-containing proteinBW43_04326Not AvailableNegative4729817 - 4734979192795.0
amp-binding domain proteinBW43_04327Not AvailableNegative4735061 - 473669560233.3
acyl-coa dehydrogenaseBW43_04328Not AvailablePositive4736847 - 473801042405.7
propionyl-coa carboxylaseBW43_04329Not AvailablePositive4738022 - 473962957539.1
gamma-carboxygeranoyl-coa hydrataseBW43_04330Not AvailablePositive4739644 - 474045029411.2
biotin carboxylase subunit of acetyl-coa carboxylaseBW43_04331Not AvailablePositive4740447 - 474237268699.3
putative phage repressorBW43_04332Not AvailableNegative4742369 - 474300423558.4
hypothetical proteinBW43_04333Not AvailablePositive4743136 - 474348612605.7
peptidase m14, carboxypeptidase aBW43_04334Not AvailablePositive4743949 - 474510043496.3

Displaying genes 4411 – 4420 of 5628 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.