Pseudomonas sp. RIT357

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. RIT357 is characterized by having a single replicon, which is crucial for its genomic stability and replication. The strain is cataloged under the accession number JFYX00000000.1, indicating its genomic sequence is publicly available for research and analysis. Pseudomonas species are known for their metabolic diversity and ability to thrive in various environments, including soil and water. This versatility suggests that Pseudomonas sp. RIT357 may play a role in nutrient cycling and ecological interactions in its native habitat. The single replicon structure might reflect a streamlined genetic configuration, potentially allowing for efficient adaptation and survival. Furthermore, the genomic data associated with this strain can provide insights into its potential applications in biotechnology, such as bioremediation or agriculture, where Pseudomonas species are often employed due to their ability to degrade pollutants or promote plant growth. Overall, understanding the traits of Pseudomonas sp. RIT357, including its genomic structure, can contribute to a broader understanding of its ecological role and potential utility in environmental and industrial applications.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. RIT357
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. RIT357
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. RIT357 contigs9, whole genome shotgun sequence.

Gene Summary

Adenine Count

1238987 bp

Thymine Count

1245200 bp

Guanine Count

1850757 bp

Cytosine Count

1843524 bp

Genome Length

6178468 bp

Protein-coding Genes

5399 genes

Non-Coding Genes

229 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putative integral membrane proteinBW43_04120Not AvailableNegative4524738 - 452501010017.5
abc transporter permeaseBW43_04121Not AvailableNegative4525021 - 452582129833.2
abc transporter permeaseBW43_04122Not AvailableNegative4525832 - 452669832337.0
putative abc transporter atp-binding proteinBW43_04123Not AvailableNegative4526695 - 452779240935.2
abc transporter atp-binding proteinBW43_04124Not AvailableNegative4527792 - 452888640772.3
putative sigma-54 activated regulatory proteinBW43_04125Not AvailablePositive4529123 - 453093467185.6
putative regulator of iron dicitrate transportBW43_04126Not AvailableNegative4530931 - 453186334070.6
putative rna polymerase sigma factorBW43_04127Not AvailableNegative4531860 - 453240219809.1
putative tonb-dependent receptorBW43_04128Not AvailableNegative4532519 - 453462777404.8
putative dna binding proteinBW43_04129Not AvailablePositive4535028 - 453565422859.4

Displaying genes 4251 – 4260 of 5628 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.