Delftia sp. RIT313

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Delftia

Description

Delftia sp. RIT313 is characterized by the presence of flagella, which suggests that it has the capability for motility. This trait can play a significant role in its ecological interactions, allowing the organism to navigate its environment effectively and potentially influencing its ability to colonize various niches. Genomic analysis of Delftia sp. RIT313 indicates that it has a single replicon, which is significant for its genetic stability and replication process. The genome is accessible under the accession number JFYT00000000.1, which facilitates further research and comparison with other strains within the Delftia genus. The motility conferred by flagella, combined with its genomic characteristics, may provide insights into the ecological roles that Delftia sp. RIT313 plays in its environment. Such traits may enhance its adaptability in diverse habitats by enabling it to respond to environmental changes, such as nutrient availability or competition with other microorganisms. Overall, Delftia sp. RIT313 exemplifies the complexity of microbial life, showcasing traits that contribute to its survival and ecological dynamics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusDelftia
SpeciesDelftia sp. RIT313
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Delftia sp. RIT313 contigs99, whole genome shotgun sequence.

Gene Summary

Adenine Count

1108990 bp

Thymine Count

1108595 bp

Guanine Count

2240050 bp

Cytosine Count

2240725 bp

Genome Length

6698360 bp

Protein-coding Genes

5816 genes

Non-Coding Genes

209 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cmp/dcmp deaminase zinc-binding proteinBW39_05925Not AvailableNegative6586736 - 658726018622.4
nitt/taut family transport system permeaseBW39_05926Not AvailableNegative6587275 - 658804227714.6
nitt/taut family transport system atp-binding proteinBW39_05927Not AvailableNegative6588059 - 658890131922.7
nitt/taut family transport system substrate-binding proteinBW39_05928Not AvailableNegative6588971 - 659000836658.4
cmp/dcmp deaminase zinc-binding proteinBW39_05929Not AvailableNegative6590064 - 659057918210.4
nmt1/thi5 like domain proteinBW39_05930Not AvailableNegative6590590 - 659161836709.0
2og-fe(ii) oxygenaseBW39_05931Not AvailablePositive6592216 - 659323838318.3
acyl-coa-binding protein acbpBW39_05932Not AvailableNegative6593466 - 65937209429.94
abc transporter related proteinBW39_05933Not AvailableNegative6593836 - 659461527821.9
hippurate hydrolaseBW39_05934Not AvailableNegative6594677 - 659588543490.2

Displaying genes 5931 – 5940 of 6025 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Export CSV
Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.