Janthinobacterium lividum strain RIT308

RodMotileaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Oxalobacteraceae

Genus

Janthinobacterium

Description

Janthinobacterium lividum strain RIT308 is a Gram-negative, aerobic, rod-shaped bacterium that possesses flagella, allowing for mobility. This strain has been noted for its association with several hosts, including Homo sapiens (humans), Oncorhynchus mykiss (rainbow trout), and Groenlandia densa (a type of aquatic plant). The optimal growth temperature for strain RIT308 is 25 degrees Celsius, indicating a preference for moderate environmental conditions. It contains a single replicon, which is a characteristic of its genetic structure. Importantly, Janthinobacterium lividum strain RIT308 is associated with health effects, specifically septicaemia, which is a serious bloodstream infection. This highlights its potential pathogenicity, particularly in human hosts and possibly in other organisms. In an ecological context, the presence of Janthinobacterium lividum in diverse environments suggests its adaptability and potential role in various ecosystems. Its association with both aquatic and terrestrial hosts indicates that it may play a role in the microbial dynamics of these environments, potentially influencing host health and ecosystem function. The understanding of its pathogenic potential, especially in relation to septicaemia, underscores the importance of studying this bacterium within both clinical and environmental microbiology. Accessions for further study of Janthinobacterium lividum strain RIT308 are available under the identifier JFYR00000000.1.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyOxalobacteraceae
GenusJanthinobacterium
SpeciesJanthinobacterium lividum
Strainstrain RIT308

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Janthinobacterium lividum strain RIT308
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature25
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Homo sapiens, Oncorhynchus mykiss, Groenlandia densa
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Janthinobacterium lividum strain RIT308 contigs9, whole genome

Gene Summary

Adenine Count

1152864 bp

Thymine Count

1159821 bp

Guanine Count

1946890 bp

Cytosine Count

1953166 bp

Genome Length

6212741 bp

Protein-coding Genes

5393 genes

Non-Coding Genes

142 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Trna-aspNot AvailableNot AvailablePositive2082931 - 2083007Not Available
dna-binding protein hu-beta (bacterial histone-like dna-binding protein)BW37_01899Not AvailableNegative2083133 - 20834119751.71
lon proteaseBW37_01900Not AvailableNegative2083610 - 208602188469.8
atp-dependent clp protease atp-binding subunit clpxBW37_01901Not AvailableNegative2086298 - 208756645867.4
atp-dependent clp protease proteolytic subunitBW37_01902Not AvailableNegative2087767 - 208839322765.7
trigger factorBW37_01903Not AvailableNegative2088470 - 208981048960.3
hypothetical proteinBW37_01904Not AvailablePositive2090411 - 20905936593.61
hypothetical proteinBW37_01905Not AvailablePositive2090556 - 209211557398.4
Trna-leuNot AvailableNot AvailablePositive2092175 - 2092257Not Available
transmembrane protein drug efflux proteinBW37_01907Not AvailableNegative2092431 - 2095529112922.0

Displaying genes 1921 – 1930 of 5535 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
SepticaemiaCausesPMC7040248

Displaying health effects 1 – 1 of 1 in total