Pseudomonas sp. RIT288

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas sp. RIT288 is characterized by having a single replicon, which indicates a relatively simple genomic structure compared to other bacterial species that may contain multiple replicons. This trait can influence its genetic stability and adaptability in various environments. The specific strain is documented under the accession number JFYN00000000.1, which provides a reference for its genomic information. Understanding the genomic characteristics of Pseudomonas sp. RIT288 can offer insights into its ecological role. Pseudomonas species are known for their metabolic versatility and ability to thrive in diverse environments, including soil, water, and as plant-associated bacteria. This adaptability often allows them to play significant roles in biogeochemical cycles and in the degradation of organic pollutants. The single replicon of RIT288 may suggest a streamlined genomic organization that could enhance its efficiency in nutrient uptake and metabolism, potentially allowing it to outcompete other microorganisms in its niche. Such efficiency can contribute to its ecological impact, particularly in environments where resources are limited or where it may be involved in bioremediation processes. In summary, Pseudomonas sp. RIT288, with its single replicon, exemplifies the genomic simplicity that can underlie ecological adaptability and metabolic proficiency, reinforcing the importance of studying such bacteria in understanding their roles in natural and engineered ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas sp. RIT288
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas sp. RIT288
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas sp. RIT288 contigs9, whole genome shotgun sequence.

Gene Summary

Adenine Count

1261744 bp

Thymine Count

1244779 bp

Guanine Count

1873665 bp

Cytosine Count

1893102 bp

Genome Length

6273290 bp

Protein-coding Genes

5463 genes

Non-Coding Genes

164 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
stress response upf0229 protein yhbhBW33_00043Not AvailablePositive44996 - 4626748624.7
spovr family proteinBW33_00044Not AvailablePositive46264 - 4782660921.0
multifunctional trna nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphataseBW33_00045Not AvailablePositive47891 - 4911445760.0
7, 8-dihydro-6-hydroxymethylpterin-pyrophosphokinaseBW33_00046Not AvailableNegative49233 - 4974818926.9
dihydroneopterin aldolase family proteinBW33_00047Not AvailableNegative49739 - 5009513194.8
membrane proteinBW33_00048Not AvailablePositive50170 - 5073920403.8
o-sialoglycoprotein endopeptidaseBW33_00049Not AvailableNegative50763 - 5178836380.1
30s ribosomal protein s21BW33_00050Not AvailablePositive51988 - 522038386.25
dna primaseBW33_00051Not AvailablePositive52685 - 5464973066.5
rna polymerase sigma factor rpodBW33_00052Not AvailablePositive54717 - 5656469321.8

Displaying genes 161 – 170 of 5627 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.