Sorangium cellulosum strain So0007-03

Gram-negative

Kingdom

Pseudomonadati

Phylum

Myxococcota

Class

Order

Polyangiales

Family

Polyangiaceae

Genus

Sorangium

Description

Sorangium cellulosum strain So0007-03 is a Gram-negative bacterium predominantly found in the rhizosphere, which is the region of soil surrounding plant roots. This habitat is significant as it suggests the strain may play a role in plant-microbe interactions, potentially influencing plant health and soil nutrient dynamics. The genomic structure of S. cellulosum strain So0007-03 is characterized by a single replicon, which is indicative of its genetic organization. This trait may affect its adaptability and survival in various environmental conditions within the rhizosphere. The strain is cataloged under the accession number JEME00000000.1, which serves as a reference for genomic studies and further research on this organism. Given its specific ecological niche and characteristics, Sorangium cellulosum strain So0007-03 may contribute to the microbial diversity in the rhizosphere and participate in essential processes such as nutrient cycling and plant growth promotion. Understanding the traits and behaviors of this bacterium can enhance our knowledge of microbial ecology and its implications for agricultural practices.

Taxonomy

KingdomPseudomonadati
PhylumMyxococcota
Class/taxonomy?kingdom=Pseudomonadati&level=klass&phylum=Myxococcota
OrderPolyangiales
FamilyPolyangiaceae
GenusSorangium
SpeciesSorangium cellulosum
Strainstrain So0007-03

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatrhizosphere
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sorangium cellulosum strain So0007-03


Gene Summary

Adenine Count

2053151 bp

Thymine Count

2039364 bp

Guanine Count

5017291 bp

Cytosine Count

5029650 bp

Genome Length

14139456 bp

Protein-coding Genes

928 genes

Non-Coding Genes

18 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
23s ribosomal rnaNot AvailableNot AvailablePositive4 - 3016Not Available
16s ribosomal rnaNot AvailableNot AvailablePositive9 - 1570Not Available
hypothetical proteinBE21_54050Not AvailableNegative853 - 296773088.5
hypothetical proteinBE21_54060Not AvailableNegative4364 - 516129213.2
Ncrna_class:rnase_p_rnaNot AvailableNot AvailablePositive6247 - 6663Not Available
protein kinaseBE21_04880Not AvailablePositive7132 - 12540197446.0
repressorBE21_04885Not AvailablePositive12555 - 1305218441.3
hypothetical proteinBE21_04890Not AvailablePositive13350 - 1376615239.3
camp-binding proteinBE21_04895Not AvailablePositive13967 - 1457822493.2
hypothetical proteinBE21_04900Not AvailablePositive14666 - 1558632990.3

Displaying genes 1 – 10 of 946 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1753 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm00005992,5-dihydroxypyridineC5H5NO2Chemical structure of 2,5-dihydroxypyridineNot available
Average111.1Da
Monoisotopic111.0320284Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da

Displaying 1–10 of 1753 metabolites

Health Effects

No health effects information available for this bacterium.