Sorangium cellulosum strain So0011-07

Gram-negative

Kingdom

Pseudomonadati

Phylum

Myxococcota

Class

Order

Polyangiales

Family

Polyangiaceae

Genus

Sorangium

Description

Sorangium cellulosum strain So0011-07 is a Gram-negative bacterium primarily found in the rhizosphere. This unique habitat suggests its potential role in plant-associated microbial communities, where it may influence plant health and soil dynamics. The strain is characterized by having a single replicon, which is indicative of its genomic organization and stability. The availability of its genomic data, with the accession number JEMB00000000.1, allows for further exploration of its genetic traits and metabolic capabilities. Understanding these characteristics can provide insights into the ecological functions that S. cellulosum strain So0011-07 may perform in its native environment. In the context of its rhizosphere habitat, Sorangium cellulosum may engage in interactions with plant roots and other microorganisms, potentially contributing to nutrient cycling, disease suppression, or plant growth promotion. Such roles are critical for maintaining healthy ecosystems and enhancing agricultural productivity. The study of this strain could reveal valuable information regarding its applications in biotechnology or agriculture, particularly in the development of biofertilizers or biocontrol agents.

Taxonomy

KingdomPseudomonadati
PhylumMyxococcota
Class/taxonomy?kingdom=Pseudomonadati&level=klass&phylum=Myxococcota
OrderPolyangiales
FamilyPolyangiaceae
GenusSorangium
SpeciesSorangium cellulosum
Strainstrain So0011-07

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatrhizosphere
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sorangium cellulosum strain So0011-07 scaffold999, whole genome

Gene Summary

Adenine Count

1759229 bp

Thymine Count

1763927 bp

Guanine Count

4228582 bp

Cytosine Count

4237053 bp

Genome Length

11990250 bp

Protein-coding Genes

7869 genes

Non-Coding Genes

61 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glycosyl hydrolaseBE17_20825Not AvailablePositive6369149 - 6372556125030.0
cdp-paratose 2-epimeraseBE17_12790P14169Negative6373140 - 637424640408.2
hypothetical proteinBE17_12795Not AvailableNegative6374783 - 637543922443.0
hypothetical proteinBE17_09275Not AvailableNegative6377360 - 63775667152.18
hypothetical proteinBE17_09280Not AvailablePositive6378259 - 637915833447.5
protein kinaseBE17_09285Not AvailablePositive6379691 - 638073637529.3
modification methylaseBE17_51440P50179Positive6383932 - 638481932570.7
hypothetical proteinBE17_51445Not AvailableNegative6384847 - 638511610225.9
hypothetical proteinBE17_27205Not AvailableNegative6388477 - 638883012313.4
hypothetical proteinBE17_27210Not AvailableNegative6388929 - 638999637156.5

Displaying genes 4261 – 4270 of 7930 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

2090 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 2090 metabolites

Health Effects

No health effects information available for this bacterium.