Actinomyces sp. ICM54

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Actinomycetales

Family

Actinomycetaceae

Genus

Actinomyces

Description

Actinomyces sp. ICM54 is characterized by having a single replicon, which indicates a streamlined genomic organization that may contribute to its efficiency in various environments. The genomic data for this strain is cataloged under the accession number JDFI00000000.1, providing a reference point for researchers interested in studying its genetic makeup and potential applications. As a member of the Actinomyces genus, ICM54 is likely to exhibit traits common to this group, including the ability to thrive in anaerobic conditions. Actinomyces species are typically found in various environments, including soil and the human oral cavity, where they play significant roles in the microbiome and contribute to processes such as nutrient cycling. The presence of a single replicon in Actinomyces sp. ICM54 may suggest an evolutionary advantage in terms of replication control and resource allocation, potentially allowing this strain to adapt to specific ecological niches more effectively. Understanding the genomic characteristics of ICM54 could provide insights into its ecological roles, interactions with other microorganisms, and potential applications in biotechnology or medicine. Further research could elucidate the unique functionalities of this strain within its habitat, contributing to our broader understanding of microbial ecosystems.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderActinomycetales
FamilyActinomycetaceae
GenusActinomyces
SpeciesActinomyces sp. ICM54
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Actinomyces sp. ICM54
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Actinomyces sp. ICM54 contig00005, whole genome shotgun sequence.

Gene Summary

Adenine Count

399483 bp

Thymine Count

407414 bp

Guanine Count

774023 bp

Cytosine Count

774127 bp

Genome Length

2355047 bp

Protein-coding Genes

2018 genes

Non-Coding Genes

75 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
histidine phosphatase superfamily (branch 1)HMPREF1522_1921Not AvailablePositive1665707 - 166637824137.6
hypothetical proteinHMPREF1522_1922Not AvailableNegative1666366 - 16665998859.25
histidine phosphatase superfamily (branch 1) domain proteinHMPREF1522_1923Not AvailablePositive1666632 - 166711417261.3
dna-binding regulatory protein, yebc/pmpr familyHMPREF1522_1924Not AvailablePositive1667263 - 166802427053.5
pyridoxal 5'-phosphate synthase, synthase subunit pdx1HMPREF1522_1925Not AvailablePositive1668027 - 166892931979.5
pyridoxal 5'-phosphate synthase, glutaminase subunit pdx2HMPREF1522_1926Not AvailablePositive1668923 - 166951620999.1
crossover junction endodeoxyribonuclease ruvcHMPREF1522_1927Not AvailablePositive1669516 - 167014521930.5
holliday junction dna helicase ruvaHMPREF1522_1928Not AvailablePositive1670201 - 167080620637.0
holliday junction dna helicase ruvbHMPREF1522_1929Not AvailablePositive1670799 - 167185137419.1
preprotein translocase subunitHMPREF1522_1930Not AvailablePositive1672031 - 167243815537.2

Displaying genes 1471 – 1480 of 2093 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.