Lysobacter capsici AZ78 unitig_4

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Lysobacter

Description

Lysobacter capsici AZ78, represented by unitig_4, is a Gram-negative bacterium characterized by its rod shape. This organism has been isolated from diverse habitats, including chromium-contaminated water, Cr-contaminated plant water, and the leaves of ready-to-eat lettuce plants. Such environments suggest that L. capsici AZ78 may possess adaptations for survival and metabolic processes in the presence of heavy metal contaminants. The strain carries a single replicon, indicating a streamlined genetic structure that may facilitate rapid adaptation to its ecological niche. The accession number JAJA00000000.2 provides a reference for further genomic analysis and exploration of its genetic traits. The presence of L. capsici AZ78 in chromium-contaminated environments highlights its potential role in bioremediation efforts. By thriving in polluted waters and plant surfaces, this bacterium may contribute to the degradation of toxic substances, thereby supporting ecosystem health and reducing the impact of contaminants on agricultural produce. Understanding the biological mechanisms that allow L. capsici AZ78 to flourish in such challenging conditions could inform strategies for managing environmental pollution and enhancing food safety in agricultural practices.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusLysobacter
SpeciesLysobacter capsici
StrainAZ78 unitig_4

Profile

Physiology
Gram staining propertiesGram-negative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Lysobacter capsici AZ78 unitig_4
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatchromium-contaminated water; Cr-contaminated plant water; leaf of ready-to-eat lettuce plant; water
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Lysobacter capsici AZ78 unitig_4, whole genome shotgun sequence.

Gene Summary

Adenine Count

1048103 bp

Thymine Count

1042384 bp

Guanine Count

2086961 bp

Cytosine Count

2092676 bp

Genome Length

6270124 bp

Protein-coding Genes

5260 genes

Non-Coding Genes

86 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
polymyxin synthetase pmxbAZ78_0421Not AvailableNegative496082 - 4963008191.43
hypothetical proteinAZ78_0422Not AvailableNegative496313 - 4964866443.77
peptide synthetaseAZ78_0423Not AvailableNegative496483 - 509034459758.0
siderophore biosynthesis non-ribosomal peptide synthetase moduleAZ78_0424Not AvailableNegative509031 - 518735356009.0
siderophore biosynthesis non-ribosomal peptide synthetase moduleAZ78_0425Not AvailableNegative518716 - 5465251010260.0
hypothetical proteinAZ78_0426Not AvailablePositive546505 - 5466635887.29
syrp-like proteinAZ78_0427Not AvailableNegative546678 - 54764935767.2
lipid a export atp-binding/permease protein msbaAZ78_0428Not AvailableNegative547834 - 54959763485.3
glucosamine-link cellobiaseAZ78_0429Not AvailableNegative552118 - 55400168107.3
nagc-like transcriptional regulator of glucosamine abc transporter and kinase clusterAZ78_0430Not AvailablePositive554189 - 55538242968.7

Displaying genes 461 – 470 of 5346 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.