Lysobacter capsici AZ78 unitig_4

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Lysobacter

Description

Lysobacter capsici AZ78, represented by unitig_4, is a Gram-negative bacterium characterized by its rod shape. This organism has been isolated from diverse habitats, including chromium-contaminated water, Cr-contaminated plant water, and the leaves of ready-to-eat lettuce plants. Such environments suggest that L. capsici AZ78 may possess adaptations for survival and metabolic processes in the presence of heavy metal contaminants. The strain carries a single replicon, indicating a streamlined genetic structure that may facilitate rapid adaptation to its ecological niche. The accession number JAJA00000000.2 provides a reference for further genomic analysis and exploration of its genetic traits. The presence of L. capsici AZ78 in chromium-contaminated environments highlights its potential role in bioremediation efforts. By thriving in polluted waters and plant surfaces, this bacterium may contribute to the degradation of toxic substances, thereby supporting ecosystem health and reducing the impact of contaminants on agricultural produce. Understanding the biological mechanisms that allow L. capsici AZ78 to flourish in such challenging conditions could inform strategies for managing environmental pollution and enhancing food safety in agricultural practices.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusLysobacter
SpeciesLysobacter capsici
StrainAZ78 unitig_4

Profile

Physiology
Gram staining propertiesGram-negative
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Lysobacter capsici AZ78 unitig_4
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatchromium-contaminated water; Cr-contaminated plant water; leaf of ready-to-eat lettuce plant; water
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Lysobacter capsici AZ78 unitig_4, whole genome shotgun sequence.

Gene Summary

Adenine Count

1048103 bp

Thymine Count

1042384 bp

Guanine Count

2086961 bp

Cytosine Count

2092676 bp

Genome Length

6270124 bp

Protein-coding Genes

5260 genes

Non-Coding Genes

86 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinAZ78_0141Not AvailableNegative152363 - 15352641314.3
g:t/u mismatch-specific uracil/thymine dna-glycosylaseAZ78_0142Not AvailableNegative154077 - 15459518651.4
triosephosphate isomeraseAZ78_0143Not AvailablePositive154809 - 15556126259.3
preprotein translocase subunit secgAZ78_0144Not AvailablePositive155635 - 15616217014.5
Trna-leuNot AvailableNot AvailablePositive156288 - 156369Not Available
nadh ubiquinone oxidoreductase chain aAZ78_0145Not AvailablePositive156541 - 15689713280.6
nadh-ubiquinone oxidoreductase chain bAZ78_0146Not AvailablePositive156888 - 15747521538.1
nadh-ubiquinone oxidoreductase chain cAZ78_0147Not AvailablePositive157472 - 15820927187.8
nadh-ubiquinone oxidoreductase chain dAZ78_0148Not AvailablePositive158209 - 15951949421.5
hypothetical proteinAZ78_0149Not AvailablePositive159516 - 1596595082.41

Displaying genes 181 – 190 of 5346 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.