Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| homocysteine s-methyltransferase | SAMN05421757_10249 | Not Available | Positive | 964985 - 965959 | 35641.8 |
| nitrilase | SAMN05421757_10250 | Not Available | Negative | 965956 - 966894 | 33801.3 |
| lipoic acid synthetase | SAMN05421757_10251 | Not Available | Negative | 966978 - 967928 | 35097.1 |
| homeodomain-like domain-containing protein | SAMN05421757_10252 | Not Available | Negative | 968116 - 969267 | 42114.1 |
| hypothetical protein | SAMN05421757_10253 | Not Available | Positive | 969475 - 969768 | 10882.3 |
| trimethylamine---corrinoid protein co-methyltransferase | SAMN05421757_10254 | Not Available | Negative | 969827 - 971368 | 55340.3 |
| nadph:quinone reductase | SAMN05421757_10255 | Not Available | Negative | 971482 - 972483 | 35608.8 |
| transcriptional regulator, lysr family | SAMN05421757_10256 | Not Available | Positive | 972568 - 973506 | 33709.4 |
| gmp synthase (glutamine-hydrolyzing) | SAMN05421757_10257 | Not Available | Positive | 973685 - 975250 | 57412.4 |
| quinol monooxygenase ygin | SAMN05421757_10258 | Not Available | Positive | 975241 - 975522 | 10291.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
