Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase | SAMN05421757_10239 | Not Available | Positive | 957288 - 958334 | 36332.3 |
| phosphatidylglycerophosphatase | SAMN05421757_10240 | Not Available | Positive | 958331 - 958831 | 17584.5 |
| hypothetical protein | SAMN05421757_10241 | Not Available | Positive | 958828 - 959325 | 16902.8 |
| nicotinamide-nucleotide amidase | SAMN05421757_10242 | Not Available | Positive | 959322 - 959867 | 18704.5 |
| poly(beta-d-mannuronate) lyase | SAMN05421757_10243 | Not Available | Positive | 960108 - 961979 | 67773.3 |
| ef hand | SAMN05421757_10244 | Not Available | Negative | 962063 - 962494 | 14926.3 |
| coenzyme q-binding protein coq10 | SAMN05421757_10245 | Not Available | Negative | 962586 - 963029 | 17001.6 |
| hypoxanthine phosphoribosyltransferase | SAMN05421757_10246 | Not Available | Positive | 963114 - 963689 | 21200.4 |
| hypothetical protein | SAMN05421757_10247 | Not Available | Positive | 963693 - 963884 | 7244.16 |
| cytochrome c, mono- and diheme variants | SAMN05421757_10248 | Not Available | Positive | 964028 - 964915 | 31853.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
