Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| penicillin amidase | SAMN05421757_10229 | Not Available | Positive | 942425 - 944887 | 90577.2 |
| gtp-binding protein hflx | SAMN05421757_10230 | Not Available | Negative | 944981 - 946165 | 43435.1 |
| rna-binding protein hfq | SAMN05421757_10231 | Not Available | Negative | 946273 - 946506 | 8775.67 |
| trk system potassium uptake protein trkh | SAMN05421757_10232 | Not Available | Negative | 946669 - 948189 | 53823.4 |
| trk system potassium uptake protein trka | SAMN05421757_10233 | Not Available | Negative | 948203 - 949579 | 50000.9 |
| two-component system, ntrc family, nitrogen regulation response regulator ntrx | SAMN05421757_10234 | Not Available | Negative | 949721 - 951133 | 51995.4 |
| two-component system, ntrc family, nitrogen regulation sensor histidine kinase ntry | SAMN05421757_10235 | Not Available | Negative | 951157 - 953403 | 82119.8 |
| two-component system, ntrc family, nitrogen regulation response regulator glng | SAMN05421757_10236 | Not Available | Negative | 953519 - 954895 | 50262.9 |
| two-component system, ntrc family, nitrogen regulation sensor histidine kinase glnl | SAMN05421757_10237 | Not Available | Negative | 954896 - 955990 | 39576.8 |
| pp_00881 | SAMN05421757_10238 | Not Available | Negative | 955987 - 956982 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
