Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05421757_101813 | Not Available | Positive | 866225 - 867676 | 55366.1 |
| predicted choloylglycine hydrolase | SAMN05421757_101814 | Not Available | Positive | 867780 - 868766 | 37063.1 |
| nucleoside abc transporter membrane protein | SAMN05421757_101815 | Not Available | Negative | 868808 - 869752 | 32228.8 |
| nucleoside abc transporter membrane protein | SAMN05421757_101816 | Not Available | Negative | 869749 - 870852 | 37722.2 |
| nucleoside abc transporter atp-binding protein | SAMN05421757_101817 | Not Available | Negative | 870849 - 872402 | 55251.2 |
| nucleoside-binding protein | SAMN05421757_101818 | Not Available | Negative | 872410 - 873402 | 34150.2 |
| adenine deaminase | SAMN05421757_101819 | Not Available | Negative | 873443 - 875332 | 68859.0 |
| creatinine amidohydrolase | SAMN05421757_101820 | Not Available | Negative | 875334 - 876083 | 26372.7 |
| regulatory helix-turn-helix protein, lysr family | SAMN05421757_101821 | Not Available | Positive | 876843 - 877460 | 22499.4 |
| lysr substrate binding domain-containing protein | SAMN05421757_101822 | Not Available | Positive | 877454 - 877741 | 10574.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
