Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| predicted extracellular nuclease | SAMN05421757_101803 | Not Available | Negative | 847846 - 852480 | 161009.0 |
| succinate semialdehyde dehydrogenase | SAMN05421757_101804 | Not Available | Negative | 852735 - 854213 | 52652.7 |
| hypothetical protein | SAMN05421757_101805 | Not Available | Negative | 854259 - 855587 | 47120.5 |
| 4-aminobutyrate aminotransferase / (s)-3-amino-2-methylpropionate transaminase | SAMN05421757_101806 | Not Available | Negative | 855706 - 857097 | 48345.2 |
| transcriptional regulator, xre family with cupin sensor | SAMN05421757_101807 | Not Available | Positive | 857326 - 857895 | 20506.2 |
| hypothetical protein | SAMN05421757_101808 | Not Available | Positive | 858058 - 859020 | 33619.3 |
| trap transporter, 4tm/12tm fusion protein | SAMN05421757_101809 | Not Available | Positive | 859149 - 861908 | 97452.7 |
| nucleotide-binding universal stress protein, uspa family | SAMN05421757_101810 | Not Available | Positive | 861923 - 862348 | 15282.7 |
| predicted amidohydrolase | SAMN05421757_101811 | Not Available | Positive | 862437 - 863405 | 35581.4 |
| arginine decarboxylase | SAMN05421757_101812 | Not Available | Positive | 863457 - 866219 | 104137.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
