Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bile acid:na+ symporter, bass family | SAMN05421757_101793 | Not Available | Positive | 825031 - 826017 | 35179.4 |
| hypothetical protein | SAMN05421757_101794 | Not Available | Positive | 827007 - 827288 | 10689.7 |
| hypothetical protein | SAMN05421757_101795 | Not Available | Positive | 827285 - 827470 | 6735.16 |
| site-specific recombinase xerd | SAMN05421757_101796 | Not Available | Positive | 827636 - 828724 | 40186.3 |
| Trna-val | Not Available | Not Available | Positive | 828801 - 828876 | Not Available |
| luxr family transcriptional regulator/luxr family transcriptional regulator, quorum-sensing system regulator ccir | SAMN05421757_101798 | Not Available | Negative | 829338 - 830063 | 26992.2 |
| broad specificity phosphatase phoe | SAMN05421757_101799 | Not Available | Negative | 830075 - 830905 | 30515.1 |
| hypothetical protein | SAMN05421757_101800 | Not Available | Negative | 830883 - 831122 | 8967.83 |
| cna protein b-type domain-containing protein | SAMN05421757_101801 | Not Available | Positive | 832249 - 843660 | 390021.0 |
| cadherin-like | SAMN05421757_101802 | Not Available | Positive | 843704 - 847618 | 131597.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
