Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| crp/fnr family transcriptional regulator, anaerobic regulatory protein | SAMN05421757_10138 | Not Available | Positive | 46439 - 47179 | 27662.5 |
| universal stress protein family protein | SAMN05421757_10139 | Not Available | Negative | 47280 - 48116 | 29948.0 |
| cytochrome c oxidase cbb3-type subunit 1 | SAMN05421757_10140 | Not Available | Positive | 48316 - 49923 | 59615.1 |
| cytochrome c oxidase cbb3-type subunit 2 | SAMN05421757_10141 | Not Available | Positive | 49939 - 50664 | 27278.3 |
| cytochrome c oxidase cbb3-type subunit 4 | SAMN05421757_10142 | Not Available | Positive | 50678 - 50878 | 7656.23 |
| cytochrome c oxidase cbb3-type subunit 3 | SAMN05421757_10143 | Not Available | Positive | 50875 - 51771 | 32148.2 |
| cytochrome c oxidase accessory protein fixg | SAMN05421757_10144 | Not Available | Positive | 52341 - 53786 | 54754.2 |
| nitrogen fixation protein fixh | SAMN05421757_10145 | Not Available | Positive | 53789 - 54238 | 16019.0 |
| cu2+-exporting atpase | SAMN05421757_10146 | Not Available | Positive | 54245 - 56452 | 76114.5 |
| cytochrome oxidase maturation protein, cbb3-type | SAMN05421757_10147 | Not Available | Positive | 56457 - 56615 | 5888.94 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
