Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hemolysin-type calcium-binding repeat-containing protein | SAMN05421757_101753 | Not Available | Negative | 779105 - 781165 | 70615.5 |
| iron(iii) transport system substrate-binding protein | SAMN05421757_101754 | Not Available | Positive | 781261 - 782292 | 37181.8 |
| iron(iii) transport system permease protein | SAMN05421757_101755 | Not Available | Negative | 782367 - 784055 | 59759.5 |
| triosephosphate isomerase | SAMN05421757_101756 | Not Available | Negative | 784069 - 784818 | 25559.5 |
| transcriptional regulator, lysr family | SAMN05421757_101757 | Not Available | Negative | 784923 - 785771 | 30935.1 |
| iron-sulfur cluster assembly protein | SAMN05421757_101758 | Not Available | Negative | 786057 - 786428 | 13347.0 |
| fes assembly suf system protein | SAMN05421757_101759 | Not Available | Negative | 786513 - 786875 | 13274.8 |
| diguanylate cyclase (ggdef) domain-containing protein | SAMN05421757_101760 | Not Available | Positive | 787067 - 788644 | 58638.8 |
| pp_00754 | SAMN05421757_101761 | Not Available | Positive | 788865 - 789995 | Not Available |
| atp-dependent proteinase. serine peptidase. merops family s16 | SAMN05421757_101762 | Not Available | Positive | 790414 - 792831 | 89064.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
