Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phospholipid/cholesterol/gamma-hch transport system permease protein | SAMN05421757_101712 | Not Available | Negative | 741222 - 742013 | 27146.8 |
| alanine racemase | SAMN05421757_101713 | Not Available | Negative | 742010 - 743062 | 36617.8 |
| degp2 peptidase. serine peptidase. merops family s01b | SAMN05421757_101714 | Not Available | Negative | 743141 - 744250 | 39347.4 |
| uncharacterized conserved protein | SAMN05421757_101715 | Not Available | Positive | 744570 - 745025 | 16639.1 |
| replicative dna helicase | SAMN05421757_101716 | Not Available | Negative | 745038 - 746555 | 55150.4 |
| orotate phosphoribosyltransferase | SAMN05421757_101717 | Not Available | Negative | 746818 - 747492 | 24522.5 |
| hemolysin-type calcium-binding repeat-containing protein | SAMN05421757_101718 | Not Available | Negative | 747664 - 749082 | 49735.3 |
| dihydroorotase | SAMN05421757_101719 | Not Available | Negative | 749212 - 750369 | 41939.6 |
| urease accessory protein | SAMN05421757_101720 | Not Available | Positive | 750443 - 751273 | 29543.9 |
| urease subunit gamma | SAMN05421757_101721 | Not Available | Positive | 751282 - 751584 | 10956.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
