Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fkbh-like domain-containing protein | SAMN05421757_101702 | Not Available | Positive | 732322 - 734067 | 65170.5 |
| methyltransferase domain-containing protein | SAMN05421757_101703 | Not Available | Positive | 734039 - 734812 | 28894.5 |
| superoxide dismutase, fe-mn family | SAMN05421757_101704 | Not Available | Positive | 734966 - 735565 | 22200.9 |
| hypothetical protein | SAMN05421757_101705 | Not Available | Positive | 735803 - 736000 | 7156.19 |
| protein required for attachment to host cells | SAMN05421757_101706 | Not Available | Positive | 736000 - 736455 | 17027.2 |
| chloramphenicol-sensitive protein rard | SAMN05421757_101707 | Not Available | Positive | 736529 - 737437 | 32394.7 |
| hypothetical protein | SAMN05421757_101708 | Not Available | Negative | 737368 - 737934 | 20417.6 |
| lysm domain-containing protein | SAMN05421757_101709 | Not Available | Positive | 738044 - 739432 | 47189.4 |
| hypothetical protein | SAMN05421757_101710 | Not Available | Negative | 739436 - 740263 | 30837.2 |
| phospholipid/cholesterol/gamma-hch transport system atp-binding protein | SAMN05421757_101711 | Not Available | Negative | 740479 - 741225 | 26851.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
