Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05421757_101692 | Not Available | Negative | 721562 - 721801 | 8967.81 |
| putative holliday junction resolvase | SAMN05421757_101693 | Not Available | Negative | 721798 - 722274 | 17145.8 |
| cytochrome c-type biogenesis protein ccmh | SAMN05421757_101694 | Not Available | Negative | 722280 - 723791 | 54213.8 |
| sarcosine oxidase subunit beta | SAMN05421757_101695 | Not Available | Positive | 724051 - 725298 | 45025.2 |
| tfox n-terminal domain-containing protein | SAMN05421757_101696 | Not Available | Positive | 725298 - 725627 | 11781.3 |
| sarcosine oxidase subunit delta | SAMN05421757_101697 | Not Available | Positive | 725632 - 725955 | 12235.5 |
| sarcosine oxidase subunit alpha | SAMN05421757_101698 | Not Available | Positive | 725952 - 728948 | 108229.0 |
| sarcosine oxidase subunit gamma | SAMN05421757_101699 | Not Available | Positive | 728941 - 729507 | 19775.7 |
| hypothetical protein | SAMN05421757_101700 | Not Available | Positive | 729666 - 730787 | 39689.6 |
| gscfa family protein | SAMN05421757_101701 | Not Available | Positive | 730932 - 732293 | 50864.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
