Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Tropicimonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Tropicimonas |
| Species | Tropicimonas sediminicola |
| Strain | strain DSM 29339 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 37 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
869409 bp
Thymine Count
870408 bp
Guanine Count
1713070 bp
Cytosine Count
1721333 bp
Genome Length
5174220 bp
Protein-coding Genes
4782 genes
Non-Coding Genes
72 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| osmoprotectant transport system permease protein | SAMN05421757_101662 | Not Available | Positive | 687415 - 688161 | 26617.5 |
| osmoprotectant transport system substrate-binding protein | SAMN05421757_101663 | Not Available | Positive | 688206 - 689090 | 31743.6 |
| predicted amidohydrolase | SAMN05421757_101664 | Not Available | Positive | 689185 - 690033 | 31294.6 |
| 2-methylcitrate dehydratase prpd | SAMN05421757_101665 | Not Available | Positive | 690038 - 691393 | 48203.6 |
| glycine/d-amino acid oxidase | SAMN05421757_101666 | Not Available | Negative | 691428 - 692774 | 48644.6 |
| rieske 2fe-2s family protein | SAMN05421757_101667 | Not Available | Positive | 693074 - 694321 | 47109.6 |
| ferredoxin-nadp reductase | SAMN05421757_101668 | Not Available | Positive | 694325 - 695413 | 39179.2 |
| transcriptional regulator, arac family with amidase-like domain | SAMN05421757_101669 | Not Available | Positive | 695538 - 696554 | 37206.9 |
| transcriptional regulator, arac family with amidase-like domain | SAMN05421757_101670 | Not Available | Negative | 696570 - 697511 | 34958.2 |
| n-methylglutamate dehydrogenase subunit a precursor | SAMN05421757_101671 | Not Available | Positive | 697606 - 698856 | 45266.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
